Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10235626	0.87[YRI][hapmap]
rs10238269	0.87[YRI][hapmap]
rs10246699	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253515	1.00[YRI][hapmap]
rs10256514	1.00[AMR][1000 genomes]
rs10258166	0.87[YRI][hapmap]
rs10258309	0.87[YRI][hapmap]
rs10258422	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10259052	1.00[YRI][hapmap]
rs10271472	0.87[YRI][hapmap]
rs10275211	1.00[AMR][1000 genomes]
rs10281006	1.00[YRI][hapmap]
rs10441358	1.00[YRI][hapmap]
rs11974367	1.00[YRI][hapmap]
rs17380636	0.87[YRI][hapmap]
rs6947978	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949079	1.00[YRI][hapmap]
rs6952265	1.00[YRI][hapmap]
rs6954982	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6972775	1.00[AMR][1000 genomes]
rs6980172	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122155800-122171000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:122157200-122161800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:122157200-122162000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:122157200-122162200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:122157400-122162200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:122157600-122162000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:122157600-122162200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:122160400-122170800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:122160800-122162400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:122161000-122161800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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