Variant report

Variant	rs10953961
Chromosome Location	chr7:122289383-122289384
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10231284	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10251826	1.00[JPT][hapmap]
rs10256973	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10258850	1.00[JPT][hapmap]
rs10272104	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11760643	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11761460	0.81[EUR][1000 genomes]
rs11763626	0.90[CEU][hapmap]
rs11765061	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs11766231	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11767048	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11768209	0.80[EUR][1000 genomes]
rs12154838	1.00[ASW][hapmap];1.00[CEU][hapmap]
rs12706423	1.00[JPT][hapmap]
rs17144796	1.00[JPT][hapmap]
rs17683741	1.00[ASW][hapmap]
rs1860861	0.88[ASN][1000 genomes]
rs2192025	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131663	1.00[CHB][hapmap]
rs55833580	0.83[EUR][1000 genomes]
rs56326447	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956211	1.00[ASW][hapmap]
rs6959220	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6963383	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs73220268	0.94[ASN][1000 genomes]
rs73220269	0.94[ASN][1000 genomes]
rs7778395	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs7779199	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs7781627	0.82[CHB][hapmap]
rs987227	1.00[JPT][hapmap]
rs9918663	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10953961	SIRPG	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122288200-122289600	Enhancers	Gastric	stomach
2	chr7:122288400-122293000	Weak transcription	Small Intestine	intestine
3	chr7:122288800-122289600	Enhancers	Pancreas	Pancrea
4	chr7:122289000-122292800	Weak transcription	Stomach Mucosa	stomach

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