Variant report

Variant	rs11765061
Chromosome Location	chr7:122294077-122294078
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122293297..122295809-chr7:122299127..122301217,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1010496	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs10239784	1.00[ASN][1000 genomes]
rs10487229	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs10953961	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs11760273	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760643	0.83[CEU][hapmap]
rs11760765	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11761460	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763626	0.83[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11764665	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11767257	1.00[ASN][1000 genomes]
rs11767400	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11768209	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769723	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11770993	1.00[ASN][1000 genomes]
rs12154838	0.83[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17381160	1.00[YRI][hapmap]
rs17381305	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17381596	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17381814	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17381835	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17465881	1.00[YRI][hapmap]
rs17465937	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs34393979	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41281719	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55833580	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56326447	0.88[EUR][1000 genomes]
rs6466821	1.00[ASN][1000 genomes]
rs7778395	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779199	0.94[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790115	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs7804719	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs995251	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122293400-122294400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:122293600-122318600	Weak transcription	Lung	lung
3	chr7:122294000-122314400	Weak transcription	Fetal Lung	lung

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