Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10231284	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10248008	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10251826	1.00[JPT][hapmap]
rs10256973	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10258850	1.00[JPT][hapmap]
rs10268918	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10272104	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10953961	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11760273	0.88[EUR][1000 genomes]
rs11760538	0.88[EUR][1000 genomes]
rs11763626	0.90[CEU][hapmap]
rs11765061	0.83[CEU][hapmap]
rs11766231	0.95[CEU][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11767048	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12154838	1.00[ASW][hapmap];1.00[CEU][hapmap]
rs12706423	1.00[JPT][hapmap]
rs17144796	1.00[JPT][hapmap]
rs17683741	1.00[ASW][hapmap]
rs2192025	0.87[AMR][1000 genomes]
rs34393979	0.88[EUR][1000 genomes]
rs41281719	0.88[EUR][1000 genomes]
rs4131663	1.00[CHB][hapmap]
rs56326447	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6956211	1.00[ASW][hapmap]
rs6959220	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6963383	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7778395	0.95[CEU][hapmap]
rs7779199	0.86[CEU][hapmap]
rs7781627	0.82[CHB][hapmap]
rs987227	1.00[JPT][hapmap]
rs9918663	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11760643	SIRPG	trans	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122269800-122288000	Weak transcription	HepG2	liver
2	chr7:122276400-122283400	Weak transcription	Fetal Lung	lung
3	chr7:122276800-122283200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:122278000-122279000	Enhancers	Esophagus	oesophagus
5	chr7:122278600-122279000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:122278600-122280200	Weak transcription	Lung	lung
7	chr7:122278600-122288200	Weak transcription	Gastric	stomach

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