Variant report

Variant	rs6956211
Chromosome Location	chr7:122091852-122091853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1010496	1.00[YRI][hapmap]
rs10487229	1.00[YRI][hapmap]
rs10953961	1.00[ASW][hapmap]
rs11760643	1.00[ASW][hapmap]
rs11760765	1.00[YRI][hapmap]
rs11763626	1.00[YRI][hapmap]
rs11764665	1.00[YRI][hapmap]
rs11767400	1.00[YRI][hapmap]
rs11769723	1.00[YRI][hapmap]
rs17381160	1.00[YRI][hapmap]
rs17381305	1.00[YRI][hapmap]
rs17381596	1.00[YRI][hapmap]
rs17381814	1.00[YRI][hapmap]
rs17381835	1.00[YRI][hapmap]
rs17465881	1.00[YRI][hapmap]
rs17465937	1.00[YRI][hapmap]
rs7790115	1.00[YRI][hapmap]
rs7804719	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6956211	C7orf58	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122022400-122095000	Weak transcription	Gastric	stomach
2	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
3	chr7:122056200-122122200	Weak transcription	Liver	Liver
4	chr7:122061200-122095200	Weak transcription	Aorta	Aorta
5	chr7:122084600-122095600	Weak transcription	Fetal Lung	lung
6	chr7:122084800-122118600	Weak transcription	Lung	lung
7	chr7:122086600-122092000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:122087600-122107600	Weak transcription	Fetal Intestine Small	intestine
9	chr7:122088200-122093400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:122089000-122110400	Weak transcription	HepG2	liver
11	chr7:122089400-122092400	Weak transcription	Adipose Nuclei	Adipose
12	chr7:122089600-122092200	Weak transcription	Right Ventricle	heart
13	chr7:122089800-122092200	Weak transcription	Fetal Heart	heart
14	chr7:122090000-122092400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:122090000-122092400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:122091200-122094800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:122091200-122095000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:122091200-122095000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:122091200-122096800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:122091200-122097400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:122091200-122097800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr7:122091400-122096800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:122091400-122097600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:122091400-122097800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr7:122091400-122113000	Weak transcription	Pancreas	Pancrea
26	chr7:122091400-122130200	Weak transcription	Ovary	ovary
27	chr7:122091400-122132800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr7:122091800-122096800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr7:122091800-122097600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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