Variant report

Variant	rs7796371
Chromosome Location	chr7:40208178-40208179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10081308	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10081355	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10156182	0.80[EUR][1000 genomes]
rs10227386	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10228020	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10229517	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10230530	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10234693	0.81[EUR][1000 genomes]
rs10242519	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10243494	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1024680	0.81[EUR][1000 genomes]
rs10259565	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10261251	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10267954	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10268288	0.81[EUR][1000 genomes]
rs10269349	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10276687	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10951626	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10951627	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11760739	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11763047	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11767697	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11768838	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11769327	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12333691	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12333929	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12530776	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12534074	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12535524	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13231777	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13233333	0.90[ASN][1000 genomes]
rs1406565	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1406566	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1534675	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1568645	0.82[EUR][1000 genomes]
rs1830422	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1874232	0.94[ASN][1000 genomes]
rs1874233	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1881683	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1881684	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1919615	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1973398	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1989589	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2009560	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2019838	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2024200	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2036041	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2052097	0.81[EUR][1000 genomes]
rs2056775	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2109340	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2329693	0.81[EUR][1000 genomes]
rs2329695	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28733232	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28742222	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34960564	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3847020	0.81[EUR][1000 genomes]
rs3847021	0.81[EUR][1000 genomes]
rs388354	0.89[ASN][1000 genomes]
rs3966459	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4720354	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4723929	0.81[EUR][1000 genomes]
rs4723931	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4723934	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60008412	0.84[EUR][1000 genomes]
rs6462961	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462963	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6462965	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66481381	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66912039	0.91[ASN][1000 genomes]
rs67438499	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6944166	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6948982	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6951375	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6952597	0.80[EUR][1000 genomes]
rs6954096	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6957274	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6957766	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960111	0.81[EUR][1000 genomes]
rs6962410	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6963804	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6968402	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6975853	0.81[EUR][1000 genomes]
rs6978474	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6979628	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71560176	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs731847	0.80[EUR][1000 genomes]
rs731848	0.80[EUR][1000 genomes]
rs7776964	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7776967	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7778061	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7779560	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7780858	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7802584	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7808529	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7809368	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7810509	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs887445	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs887447	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9639818	0.81[EUR][1000 genomes]
rs9639824	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9690188	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9791485	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756801	chr7:40060180-40269583	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2759525	chr7:40060180-40269583	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv34547	chr7:40077032-40230965	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1032278	chr7:40097371-40396300	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1029560	chr7:40179906-40215882	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1032849	chr7:40179906-40220205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1026521	chr7:40182678-40220205	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv464438	chr7:40193535-40350887	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv606710	chr7:40193535-40350887	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1019032	chr7:40204606-40280323	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv966785	chr7:40205005-40220458	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40206800-40209200	Enhancers	Fetal Intestine Small	intestine
2	chr7:40207000-40209800	Enhancers	Fetal Intestine Large	intestine

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