Variant report
Variant | rs1874232 |
---|---|
Chromosome Location | chr7:40192445-40192446 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:40183573..40185979-chr7:40191227..40192891,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10081308 | 0.91[ASN][1000 genomes] |
rs10081355 | 0.94[ASN][1000 genomes] |
rs10227386 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs10228020 | 0.94[ASN][1000 genomes] |
rs10229517 | 0.94[ASN][1000 genomes] |
rs10230530 | 0.94[ASN][1000 genomes] |
rs10242519 | 0.94[ASN][1000 genomes] |
rs10243494 | 0.94[ASN][1000 genomes] |
rs10259565 | 0.93[ASN][1000 genomes] |
rs10261251 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs10267954 | 0.99[ASN][1000 genomes] |
rs10269349 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs10276687 | 0.90[ASN][1000 genomes] |
rs10951626 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs10951627 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs11760739 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs11763047 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs11767697 | 0.93[ASN][1000 genomes] |
rs11768838 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs11769327 | 0.94[ASN][1000 genomes] |
rs12333691 | 0.95[ASN][1000 genomes] |
rs12333929 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs12530776 | 0.94[ASN][1000 genomes] |
rs12530835 | 1.00[YRI][hapmap] |
rs12534074 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs12535524 | 0.94[ASN][1000 genomes] |
rs13231777 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs13233333 | 0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1406565 | 0.94[ASN][1000 genomes] |
rs1406566 | 0.95[ASN][1000 genomes] |
rs1534675 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes] |
rs1830422 | 0.89[ASN][1000 genomes] |
rs1874233 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs1881683 | 0.94[ASN][1000 genomes] |
rs1881684 | 0.99[ASN][1000 genomes] |
rs1919615 | 0.94[ASN][1000 genomes] |
rs1973398 | 0.89[ASN][1000 genomes] |
rs1989589 | 0.94[ASN][1000 genomes] |
rs2009560 | 0.94[ASN][1000 genomes] |
rs2019838 | 0.92[ASN][1000 genomes] |
rs2024200 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs2036041 | 0.94[ASN][1000 genomes] |
rs2056775 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs2109340 | 0.94[ASN][1000 genomes] |
rs2329695 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs28733232 | 0.92[ASN][1000 genomes] |
rs28742222 | 0.94[ASN][1000 genomes] |
rs34960564 | 0.95[ASN][1000 genomes] |
rs388354 | 0.92[ASN][1000 genomes] |
rs3966459 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs4720352 | 0.82[EUR][1000 genomes] |
rs4720354 | 0.94[ASN][1000 genomes] |
rs4723931 | 0.92[ASN][1000 genomes] |
rs4723934 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs6462961 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs6462962 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
rs6462963 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs6462965 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
rs66481381 | 0.91[ASN][1000 genomes] |
rs66912039 | 0.88[ASN][1000 genomes] |
rs67438499 | 0.91[ASN][1000 genomes] |
rs6944166 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
rs6948982 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs6951375 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs6954096 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs6957274 | 0.92[ASN][1000 genomes] |
rs6957766 | 0.94[ASN][1000 genomes] |
rs6962410 | 0.94[ASN][1000 genomes] |
rs6963804 | 0.94[ASN][1000 genomes] |
rs6968402 | 0.95[ASN][1000 genomes] |
rs6974493 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
rs6978474 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs6979628 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs71560176 | 0.94[ASN][1000 genomes] |
rs7776964 | 0.93[ASN][1000 genomes] |
rs7776967 | 0.93[ASN][1000 genomes] |
rs7778061 | 0.94[ASN][1000 genomes] |
rs7779560 | 0.85[ASN][1000 genomes] |
rs7780858 | 0.94[ASN][1000 genomes] |
rs7796371 | 0.94[ASN][1000 genomes] |
rs7802584 | 0.94[ASN][1000 genomes] |
rs7808529 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs7809368 | 0.94[ASN][1000 genomes] |
rs7810509 | 0.94[ASN][1000 genomes] |
rs887445 | 0.94[ASN][1000 genomes] |
rs887447 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs9639824 | 0.89[ASN][1000 genomes] |
rs9690188 | 0.98[ASN][1000 genomes] |
rs9791485 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2756801 | chr7:40060180-40269583 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
2 | esv2759525 | chr7:40060180-40269583 | Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
3 | nsv887979 | chr7:40067021-40193535 | Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
4 | nsv887980 | chr7:40067021-40203356 | Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
5 | nsv887981 | chr7:40075461-40203356 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
6 | nsv971193 | chr7:40075881-40197955 | Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
7 | esv34547 | chr7:40077032-40230965 | Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
8 | nsv824080 | chr7:40077089-40198644 | Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
9 | nsv464437 | chr7:40094641-40197168 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
10 | nsv606709 | chr7:40094641-40197168 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
11 | nsv1032278 | chr7:40097371-40396300 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
12 | nsv887982 | chr7:40098787-40193535 | Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
13 | nsv1024735 | chr7:40149227-40203356 | Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
14 | nsv1029560 | chr7:40179906-40215882 | Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
15 | nsv1032849 | chr7:40179906-40220205 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
16 | nsv1026521 | chr7:40182678-40220205 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:40181200-40202400 | Weak transcription | HSMMtube | muscle |
2 | chr7:40190200-40202200 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
3 | chr7:40192000-40196000 | Weak transcription | Fetal Intestine Large | intestine |
4 | chr7:40192200-40196000 | Weak transcription | Fetal Intestine Small | intestine |
5 | chr7:40192200-40196000 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
6 | chr7:40192200-40196200 | Weak transcription | Rectal Mucosa Donor 29 | rectum |