Variant report

Variant	rs7797142
Chromosome Location	chr7:50582408-50582409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10239937	0.81[EUR][1000 genomes]
rs10244632	0.81[EUR][1000 genomes]
rs10249982	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10274275	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12535064	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12538830	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1451366	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1451368	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1901311	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1901312	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1982406	0.81[EUR][1000 genomes]
rs2100280	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2122818	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2122821	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2167366	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4947588	0.85[AMR][1000 genomes]
rs4947589	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6592963	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6592973	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6952023	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6963534	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6967361	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6970468	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6974583	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73121277	0.81[AMR][1000 genomes]
rs7777600	0.80[EUR][1000 genomes]
rs7807564	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9918591	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9918702	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv888021	chr7:50538589-50610071	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1015758	chr7:50565404-50768153	Flanking Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1023228	chr7:50573214-50777634	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50543600-50595000	Weak transcription	Liver	Liver
2	chr7:50565200-50609000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:50569000-50592800	Weak transcription	HepG2	liver
4	chr7:50577000-50583400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:50582000-50585600	Weak transcription	Fetal Intestine Large	intestine
6	chr7:50582000-50589400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:50582000-50595200	Weak transcription	Fetal Intestine Small	intestine

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