Variant report

Variant	rs7777600
Chromosome Location	chr7:50592671-50592672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10239937	0.84[EUR][1000 genomes]
rs10244632	0.84[EUR][1000 genomes]
rs10249982	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs10274275	0.91[EUR][1000 genomes]
rs1107742	0.85[ASN][1000 genomes]
rs1107743	0.90[CHB][hapmap];0.84[CHD][hapmap];0.85[ASN][1000 genomes]
rs11575282	0.90[CHB][hapmap];0.92[CHD][hapmap];0.89[ASN][1000 genomes]
rs11575286	0.90[CHB][hapmap];0.92[CHD][hapmap];0.89[ASN][1000 genomes]
rs11575313	0.90[CHB][hapmap];0.91[ASN][1000 genomes]
rs11575321	0.90[CHB][hapmap];0.91[ASN][1000 genomes]
rs11575322	0.90[CHB][hapmap];0.92[CHD][hapmap];0.91[ASN][1000 genomes]
rs11575338	0.90[CHB][hapmap];0.91[ASN][1000 genomes]
rs11575349	0.91[ASN][1000 genomes]
rs11575410	0.85[ASN][1000 genomes]
rs11575442	0.85[ASN][1000 genomes]
rs11575521	0.85[ASN][1000 genomes]
rs11575548	0.90[CHB][hapmap];0.84[CHD][hapmap];0.81[ASN][1000 genomes]
rs11575553	0.81[CHB][hapmap]
rs12535064	0.95[CEU][hapmap];0.82[TSI][hapmap];0.91[EUR][1000 genomes]
rs12538830	1.00[CEU][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs1349491	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs1451366	0.91[EUR][1000 genomes]
rs1451368	0.91[EUR][1000 genomes]
rs1470748	0.85[ASN][1000 genomes]
rs17634717	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs17634958	0.90[CHB][hapmap];0.84[CHD][hapmap];0.85[ASN][1000 genomes]
rs17635123	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs1901311	0.91[EUR][1000 genomes]
rs1901312	0.91[EUR][1000 genomes]
rs1982406	0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs2100279	0.91[ASN][1000 genomes]
rs2100280	0.95[CEU][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs2122817	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs2122818	0.91[EUR][1000 genomes]
rs2122821	0.91[EUR][1000 genomes]
rs2167364	0.83[CHB][hapmap]
rs2167366	0.90[EUR][1000 genomes]
rs2242041	0.81[CHB][hapmap]
rs2329367	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs2329369	0.85[ASN][1000 genomes]
rs2876826	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2876830	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs3735274	0.95[CEU][hapmap];0.86[TSI][hapmap]
rs3779081	0.85[ASN][1000 genomes]
rs3807553	0.90[CHB][hapmap];0.92[CHD][hapmap];0.91[ASN][1000 genomes]
rs4602840	0.85[ASN][1000 genomes]
rs4947588	0.81[EUR][1000 genomes]
rs4947589	0.84[EUR][1000 genomes]
rs6592963	0.95[CEU][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs6592973	0.90[EUR][1000 genomes]
rs6944090	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs6952023	0.91[EUR][1000 genomes]
rs6963534	0.91[EUR][1000 genomes]
rs6967361	0.89[EUR][1000 genomes]
rs6970468	0.91[EUR][1000 genomes]
rs6974583	0.88[EUR][1000 genomes]
rs73117270	0.85[ASN][1000 genomes]
rs73119230	0.85[ASN][1000 genomes]
rs73119239	0.85[ASN][1000 genomes]
rs73119245	0.85[ASN][1000 genomes]
rs73119251	0.85[ASN][1000 genomes]
rs73121271	0.85[ASN][1000 genomes]
rs73121282	0.87[ASN][1000 genomes]
rs73121285	0.87[ASN][1000 genomes]
rs73121287	0.87[ASN][1000 genomes]
rs73121290	0.87[ASN][1000 genomes]
rs73121292	0.87[ASN][1000 genomes]
rs73123220	0.91[ASN][1000 genomes]
rs73123247	0.91[ASN][1000 genomes]
rs73123249	0.91[ASN][1000 genomes]
rs73123251	0.91[ASN][1000 genomes]
rs73123254	0.91[ASN][1000 genomes]
rs73123257	0.91[ASN][1000 genomes]
rs73123261	0.91[ASN][1000 genomes]
rs73123264	0.91[ASN][1000 genomes]
rs73123266	0.91[ASN][1000 genomes]
rs73123283	0.89[ASN][1000 genomes]
rs73123285	0.89[ASN][1000 genomes]
rs73123291	0.89[ASN][1000 genomes]
rs73125208	0.87[ASN][1000 genomes]
rs73125215	0.87[ASN][1000 genomes]
rs73125225	0.87[ASN][1000 genomes]
rs7797142	0.80[EUR][1000 genomes]
rs7807564	0.91[EUR][1000 genomes]
rs7809234	1.00[JPT][hapmap]
rs896308	0.85[ASN][1000 genomes]
rs9918591	0.91[EUR][1000 genomes]
rs9918702	0.95[CEU][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv888021	chr7:50538589-50610071	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1015758	chr7:50565404-50768153	Flanking Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1023228	chr7:50573214-50777634	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50543600-50595000	Weak transcription	Liver	Liver
2	chr7:50565200-50609000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:50569000-50592800	Weak transcription	HepG2	liver
4	chr7:50582000-50595200	Weak transcription	Fetal Intestine Small	intestine
5	chr7:50584200-50595800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:50589000-50599200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:50589400-50595600	Strong transcription	Duodenum Mucosa	Duodenum
8	chr7:50592600-50593400	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links