The 2.0 version of rSNPBase

Variant report

Variant rs896308
Chromosome Location chr7:50569687-50569688
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:50543600-50595000 Weak transcription Liver Liver
2 chr7:50560800-50581000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr7:50565200-50569800 Weak transcription Right Atrium heart
4 chr7:50565200-50570000 Weak transcription Left Ventricle heart
5 chr7:50565200-50570200 Weak transcription Lung lung
6 chr7:50565200-50572600 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr7:50565200-50609000 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr7:50565400-50569800 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr7:50565400-50570000 Weak transcription Pancreas Pancrea
10 chr7:50565400-50570000 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr7:50565400-50570000 Enhancers Hela-S3 cervix
12 chr7:50565600-50569800 Weak transcription Fetal Lung lung
13 chr7:50565800-50570000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr7:50566200-50569800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr7:50566200-50569800 Weak transcription Ovary ovary
16 chr7:50566200-50576000 Weak transcription Colonic Mucosa Colon
17 chr7:50566200-50581200 Strong transcription Fetal Intestine Small intestine
18 chr7:50566400-50572600 Strong transcription Fetal Intestine Large intestine
19 chr7:50566600-50569800 Weak transcription HUVEC blood vessel
20 chr7:50566800-50571400 Strong transcription Duodenum Mucosa Duodenum
21 chr7:50567800-50569800 Weak transcription Fetal Muscle Trunk muscle
22 chr7:50568200-50574400 Enhancers Fetal Muscle Leg muscle
23 chr7:50568400-50570200 Enhancers Skeletal Muscle Female skeletal muscle
24 chr7:50568800-50569800 Enhancers Muscle Satellite Cultured Cells --
25 chr7:50568800-50571400 Enhancers HMEC breast
26 chr7:50569000-50570400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr7:50569000-50570600 Weak transcription Psoas Muscle Psoas
28 chr7:50569000-50592800 Weak transcription HepG2 liver
29 chr7:50569200-50570400 Enhancers Colon Smooth Muscle Colon
30 chr7:50569400-50569800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
31 chr7:50569400-50570000 Enhancers Stomach Smooth Muscle stomach
32 chr7:50569400-50571000 Enhancers Primary hematopoietic stem cells blood
33 chr7:50569400-50571200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr7:50569400-50572000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr7:50569600-50569800 Flanking Active TSS Skeletal Muscle Male skeletal muscle
36 chr7:50569600-50570200 Enhancers Fetal Adrenal Gland Adrenal Gland
37 chr7:50569600-50570400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr7:50569600-50570600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr7:50569600-50570600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr7:50569600-50570800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr7:50569600-50571200 Enhancers Fetal Stomach stomach
42 chr7:50569600-50571200 Enhancers Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015