Variant report
Variant | rs56056130 |
---|---|
Chromosome Location | chr7:50493700-50493701 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:50490774..50493016-chr7:50493621..50495493,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1037350 | 1.00[ASN][1000 genomes] |
rs10499691 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1107742 | 0.93[ASN][1000 genomes] |
rs1107743 | 0.93[ASN][1000 genomes] |
rs11575282 | 0.84[ASN][1000 genomes] |
rs11575286 | 0.84[ASN][1000 genomes] |
rs11575313 | 0.87[ASN][1000 genomes] |
rs11575321 | 0.87[ASN][1000 genomes] |
rs11575322 | 0.87[ASN][1000 genomes] |
rs11575338 | 0.87[ASN][1000 genomes] |
rs11575349 | 0.87[ASN][1000 genomes] |
rs11575410 | 0.93[ASN][1000 genomes] |
rs11575442 | 0.93[ASN][1000 genomes] |
rs11575521 | 0.93[ASN][1000 genomes] |
rs11575548 | 0.98[ASN][1000 genomes] |
rs11575553 | 1.00[ASN][1000 genomes] |
rs11575562 | 1.00[ASN][1000 genomes] |
rs11976368 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11978591 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1349491 | 0.84[ASN][1000 genomes] |
rs1470748 | 0.93[ASN][1000 genomes] |
rs17133817 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17133826 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17553036 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17634476 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17634717 | 0.98[ASN][1000 genomes] |
rs17634958 | 0.93[ASN][1000 genomes] |
rs17635123 | 0.93[ASN][1000 genomes] |
rs2100279 | 0.87[ASN][1000 genomes] |
rs2122817 | 0.93[ASN][1000 genomes] |
rs2242041 | 1.00[ASN][1000 genomes] |
rs2329367 | 0.93[ASN][1000 genomes] |
rs2329369 | 0.93[ASN][1000 genomes] |
rs2876826 | 0.83[ASN][1000 genomes] |
rs2876830 | 0.84[ASN][1000 genomes] |
rs3173669 | 0.86[AFR][1000 genomes] |
rs34672220 | 0.86[ASN][1000 genomes] |
rs35399233 | 0.86[ASN][1000 genomes] |
rs3779081 | 0.93[ASN][1000 genomes] |
rs3807553 | 0.87[ASN][1000 genomes] |
rs4602840 | 0.93[ASN][1000 genomes] |
rs59828622 | 0.93[AFR][1000 genomes] |
rs61016409 | 0.86[ASN][1000 genomes] |
rs6959427 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6962370 | 0.82[ASN][1000 genomes] |
rs6978556 | 0.86[AFR][1000 genomes] |
rs71018475 | 0.81[ASN][1000 genomes] |
rs73117270 | 0.93[ASN][1000 genomes] |
rs73119230 | 0.93[ASN][1000 genomes] |
rs73119239 | 0.93[ASN][1000 genomes] |
rs73119245 | 0.93[ASN][1000 genomes] |
rs73119251 | 0.93[ASN][1000 genomes] |
rs73121271 | 0.93[ASN][1000 genomes] |
rs73121282 | 0.91[ASN][1000 genomes] |
rs73121285 | 0.91[ASN][1000 genomes] |
rs73121287 | 0.91[ASN][1000 genomes] |
rs73121290 | 0.91[ASN][1000 genomes] |
rs73121292 | 0.91[ASN][1000 genomes] |
rs73123220 | 0.87[ASN][1000 genomes] |
rs73123247 | 0.87[ASN][1000 genomes] |
rs73123249 | 0.87[ASN][1000 genomes] |
rs73123251 | 0.87[ASN][1000 genomes] |
rs73123254 | 0.87[ASN][1000 genomes] |
rs73123257 | 0.87[ASN][1000 genomes] |
rs73123261 | 0.87[ASN][1000 genomes] |
rs73123264 | 0.87[ASN][1000 genomes] |
rs73123266 | 0.87[ASN][1000 genomes] |
rs73123283 | 0.84[ASN][1000 genomes] |
rs73123285 | 0.84[ASN][1000 genomes] |
rs73123291 | 0.84[ASN][1000 genomes] |
rs73125208 | 0.82[ASN][1000 genomes] |
rs73125215 | 0.82[ASN][1000 genomes] |
rs73125225 | 0.82[ASN][1000 genomes] |
rs73695640 | 0.94[AFR][1000 genomes] |
rs73695641 | 0.94[AFR][1000 genomes] |
rs73695642 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73695643 | 0.94[AFR][1000 genomes] |
rs73695660 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73695661 | 0.93[AFR][1000 genomes] |
rs73695663 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73695667 | 0.86[AFR][1000 genomes] |
rs73695668 | 0.86[AFR][1000 genomes] |
rs73695671 | 0.86[AFR][1000 genomes] |
rs7455944 | 0.86[ASN][1000 genomes] |
rs7797772 | 0.86[ASN][1000 genomes] |
rs896308 | 0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1016665 | chr7:50452552-51404524 | Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
2 | nsv515738 | chr7:50476109-50494207 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:50486200-50513200 | Weak transcription | Primary T killer naive cells fromperipheralblood | blood |
2 | chr7:50486600-50495000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
3 | chr7:50493400-50505800 | Weak transcription | Thymus | Thymus |