Variant report

Variant	rs7797772
Chromosome Location	chr7:50460208-50460209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:50454599..50456922-chr7:50460063..50461739,2	K562	blood:
2	chr7:50458483..50461441-chr7:50461737..50464735,2	K562	blood:
3	chr7:50454599..50457832-chr7:50460063..50462118,3	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10268819	1.00[JPT][hapmap]
rs1037350	0.86[ASN][1000 genomes]
rs10499691	0.86[ASN][1000 genomes]
rs10499696	1.00[JPT][hapmap]
rs1107742	0.84[ASN][1000 genomes]
rs1107743	0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11575282	0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs11575286	0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs11575298	1.00[JPT][hapmap]
rs11575313	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11575321	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11575322	0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs11575338	0.90[CHB][hapmap]
rs11575342	1.00[JPT][hapmap]
rs11575404	1.00[JPT][hapmap]
rs11575410	0.84[ASN][1000 genomes]
rs11575442	0.84[ASN][1000 genomes]
rs11575521	0.84[ASN][1000 genomes]
rs11575548	0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11575553	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11575562	0.86[ASN][1000 genomes]
rs11771818	1.00[JPT][hapmap]
rs11976368	0.86[ASN][1000 genomes]
rs11978591	0.86[ASN][1000 genomes]
rs1349491	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1466163	1.00[JPT][hapmap]
rs1470748	0.84[ASN][1000 genomes]
rs17133817	0.86[ASN][1000 genomes]
rs17133826	0.86[ASN][1000 genomes]
rs17553036	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17553791	1.00[JPT][hapmap]
rs17634476	0.86[ASN][1000 genomes]
rs17634717	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17634771	1.00[JPT][hapmap]
rs17634958	0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17635123	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2122817	0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs2242041	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2329367	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2329369	0.84[ASN][1000 genomes]
rs2876830	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3177656	1.00[JPT][hapmap]
rs34672220	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35399233	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3779081	0.84[ASN][1000 genomes]
rs3807553	0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs4602840	0.84[ASN][1000 genomes]
rs56056130	0.86[ASN][1000 genomes]
rs61016409	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944090	0.81[CHB][hapmap];0.85[CHD][hapmap]
rs6959427	0.91[ASN][1000 genomes]
rs6962370	0.95[ASN][1000 genomes]
rs73117270	0.84[ASN][1000 genomes]
rs73119230	0.84[ASN][1000 genomes]
rs73119239	0.84[ASN][1000 genomes]
rs73119245	0.84[ASN][1000 genomes]
rs73119251	0.84[ASN][1000 genomes]
rs73121271	0.84[ASN][1000 genomes]
rs73121282	0.82[ASN][1000 genomes]
rs73121285	0.82[ASN][1000 genomes]
rs73121287	0.82[ASN][1000 genomes]
rs73121290	0.82[ASN][1000 genomes]
rs73121292	0.82[ASN][1000 genomes]
rs73695642	0.86[ASN][1000 genomes]
rs73695660	0.86[ASN][1000 genomes]
rs73695663	0.86[ASN][1000 genomes]
rs7455944	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777600	0.81[CHB][hapmap]
rs896308	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50420000-50461800	Genic enhancers	Primary T cells fromperipheralblood	blood
2	chr7:50431200-50460600	Strong transcription	Dnd41	blood
3	chr7:50431400-50472600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:50439400-50460600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
5	chr7:50440800-50461400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:50441200-50460400	Strong transcription	Primary hematopoietic stem cells	blood
7	chr7:50441200-50460400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:50445400-50461400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:50446600-50461400	Weak transcription	Colonic Mucosa	Colon
10	chr7:50447200-50467400	Weak transcription	Esophagus	oesophagus
11	chr7:50447200-50467400	Weak transcription	Gastric	stomach
12	chr7:50449200-50467400	Weak transcription	Liver	Liver
13	chr7:50451400-50462600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:50453200-50467800	Weak transcription	Pancreas	Pancrea
15	chr7:50454400-50461000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr7:50454600-50460800	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:50454600-50461000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
18	chr7:50454600-50462400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr7:50455400-50463400	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:50455600-50461200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr7:50456200-50461200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr7:50456600-50462200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr7:50456800-50461200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr7:50457400-50461400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr7:50457400-50461400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:50459000-50460800	Strong transcription	Spleen	Spleen
27	chr7:50459000-50462600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr7:50459200-50460800	Genic enhancers	Primary B cells from cord blood	blood
29	chr7:50459200-50461200	Genic enhancers	Primary B cells from peripheral blood	blood
30	chr7:50459200-50462400	Genic enhancers	Fetal Thymus	thymus
31	chr7:50459400-50462400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr7:50459800-50460800	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr7:50459800-50462400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr7:50459800-50462600	Genic enhancers	Primary monocytes fromperipheralblood	blood
35	chr7:50460000-50460400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
36	chr7:50460000-50460400	ZNF genes & repeats	Lung	lung
37	chr7:50460000-50462000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:50460000-50462000	Genic enhancers	K562	blood
39	chr7:50460000-50462200	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
40	chr7:50460000-50462600	Genic enhancers	GM12878-XiMat	blood
41	chr7:50460200-50461400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:50460200-50462200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:50460200-50462600	Genic enhancers	Thymus	Thymus
44	chr7:50460200-50464200	Genic enhancers	Monocytes-CD14+_RO01746	blood

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