Variant report

Variant	rs11575410
Chromosome Location	chr7:50564078-50564079
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1037350	0.93[ASN][1000 genomes]
rs10499691	0.93[ASN][1000 genomes]
rs1107742	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1107743	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11575282	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11575286	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11575313	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11575321	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11575322	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11575338	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11575349	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11575442	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11575521	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11575548	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11575553	0.93[ASN][1000 genomes]
rs11575562	0.93[ASN][1000 genomes]
rs11976368	0.93[ASN][1000 genomes]
rs11978591	0.93[ASN][1000 genomes]
rs1349491	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1470748	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133817	0.93[ASN][1000 genomes]
rs17133826	0.93[ASN][1000 genomes]
rs17553036	0.93[ASN][1000 genomes]
rs17634476	0.93[ASN][1000 genomes]
rs17634717	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17634958	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100279	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2122817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2242041	0.93[ASN][1000 genomes]
rs2329367	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329369	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876826	0.89[ASN][1000 genomes]
rs2876830	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34672220	0.84[ASN][1000 genomes]
rs35399233	0.84[ASN][1000 genomes]
rs3779081	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3807553	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4602840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56056130	0.93[ASN][1000 genomes]
rs61016409	0.84[ASN][1000 genomes]
rs6959427	0.89[ASN][1000 genomes]
rs71018475	0.87[ASN][1000 genomes]
rs73117270	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73119230	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73119239	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73119245	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73119251	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73121271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73121282	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73121285	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73121287	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73121290	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73121292	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73123220	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73123247	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73123249	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73123251	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73123254	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73123257	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73123261	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73123264	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73123266	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73123283	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73123285	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73123291	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73125208	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73125215	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73125225	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73695642	0.93[ASN][1000 genomes]
rs73695660	0.93[ASN][1000 genomes]
rs73695663	0.93[ASN][1000 genomes]
rs7455944	0.84[ASN][1000 genomes]
rs7777600	0.85[ASN][1000 genomes]
rs7797772	0.84[ASN][1000 genomes]
rs896308	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv888021	chr7:50538589-50610071	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv606905	chr7:50544063-50565963	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50543600-50595000	Weak transcription	Liver	Liver
2	chr7:50545800-50565800	Weak transcription	HepG2	liver
3	chr7:50548800-50564400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:50557400-50564200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:50559600-50564200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:50559600-50564800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr7:50560600-50566200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr7:50560800-50564200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:50560800-50564200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:50560800-50581000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:50561000-50564200	Weak transcription	Gastric	stomach
12	chr7:50561200-50564200	Weak transcription	Spleen	Spleen
13	chr7:50562000-50564400	Weak transcription	Small Intestine	intestine
14	chr7:50562600-50564200	Enhancers	HUVEC	blood vessel
15	chr7:50562800-50566000	Enhancers	Fetal Intestine Large	intestine
16	chr7:50562800-50566200	Enhancers	Primary hematopoietic stem cells	blood
17	chr7:50562800-50566200	Genic enhancers	Fetal Intestine Small	intestine
18	chr7:50563200-50564400	Weak transcription	Adipose Nuclei	Adipose
19	chr7:50563600-50564200	Enhancers	Hela-S3	cervix
20	chr7:50563600-50564200	Enhancers	K562	blood
21	chr7:50563600-50566200	Enhancers	Duodenum Mucosa	Duodenum
22	chr7:50563800-50565200	Enhancers	Lung	lung
23	chr7:50563800-50566000	Enhancers	Stomach Mucosa	stomach
24	chr7:50564000-50565000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr7:50564000-50565400	Enhancers	Placenta	Placenta
26	chr7:50564000-50566200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:50564000-50566200	Enhancers	Ovary	ovary

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