Variant report

Variant	rs73695660
Chromosome Location	chr7:50486494-50486495
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:50484672..50487398-chr7:50490393..50493667,4	K562	blood:
2	chr7:50484194..50487347-chr7:50489470..50493667,5	K562	blood:
3	chr7:50486332..50488429-chr7:50495573..50497153,2	K562	blood:
4	chr7:50159434..50160127-chr7:50485653..50486534,3	K562	blood:
5	chr7:50473414..50475429-chr7:50484863..50486654,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FIGNL1-3	chr7:50485943-50488423	l_3413_chr7:50485640-50488510_testes

No data

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1037350	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499691	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1107742	0.93[ASN][1000 genomes]
rs1107743	0.93[ASN][1000 genomes]
rs11575282	0.84[ASN][1000 genomes]
rs11575286	0.84[ASN][1000 genomes]
rs11575313	0.87[ASN][1000 genomes]
rs11575321	0.87[ASN][1000 genomes]
rs11575322	0.87[ASN][1000 genomes]
rs11575338	0.87[ASN][1000 genomes]
rs11575349	0.87[ASN][1000 genomes]
rs11575410	0.93[ASN][1000 genomes]
rs11575442	0.93[ASN][1000 genomes]
rs11575521	0.93[ASN][1000 genomes]
rs11575548	0.98[ASN][1000 genomes]
rs11575553	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11575562	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11976368	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11978591	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1349491	0.84[ASN][1000 genomes]
rs1470748	0.93[ASN][1000 genomes]
rs17133817	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133826	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17553036	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17634476	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17634717	0.98[ASN][1000 genomes]
rs17634958	0.93[ASN][1000 genomes]
rs17635123	0.93[ASN][1000 genomes]
rs2100279	0.87[ASN][1000 genomes]
rs2122817	0.93[ASN][1000 genomes]
rs2242041	1.00[ASN][1000 genomes]
rs2329367	0.93[ASN][1000 genomes]
rs2329369	0.93[ASN][1000 genomes]
rs2876826	0.83[ASN][1000 genomes]
rs2876830	0.84[ASN][1000 genomes]
rs34672220	0.86[ASN][1000 genomes]
rs35399233	0.86[ASN][1000 genomes]
rs3779081	0.93[ASN][1000 genomes]
rs3807553	0.87[ASN][1000 genomes]
rs4602840	0.93[ASN][1000 genomes]
rs56056130	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61016409	0.86[ASN][1000 genomes]
rs6959427	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6962370	0.82[ASN][1000 genomes]
rs71018475	0.81[ASN][1000 genomes]
rs73117270	0.93[ASN][1000 genomes]
rs73119230	0.93[ASN][1000 genomes]
rs73119239	0.93[ASN][1000 genomes]
rs73119245	0.93[ASN][1000 genomes]
rs73119251	0.93[ASN][1000 genomes]
rs73121271	0.93[ASN][1000 genomes]
rs73121282	0.91[ASN][1000 genomes]
rs73121285	0.91[ASN][1000 genomes]
rs73121287	0.91[ASN][1000 genomes]
rs73121290	0.91[ASN][1000 genomes]
rs73121292	0.91[ASN][1000 genomes]
rs73123220	0.87[ASN][1000 genomes]
rs73123247	0.87[ASN][1000 genomes]
rs73123249	0.87[ASN][1000 genomes]
rs73123251	0.87[ASN][1000 genomes]
rs73123254	0.87[ASN][1000 genomes]
rs73123257	0.87[ASN][1000 genomes]
rs73123261	0.87[ASN][1000 genomes]
rs73123264	0.87[ASN][1000 genomes]
rs73123266	0.87[ASN][1000 genomes]
rs73123283	0.84[ASN][1000 genomes]
rs73123285	0.84[ASN][1000 genomes]
rs73123291	0.84[ASN][1000 genomes]
rs73125208	0.82[ASN][1000 genomes]
rs73125215	0.82[ASN][1000 genomes]
rs73125225	0.82[ASN][1000 genomes]
rs73695642	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73695663	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7455944	0.86[ASN][1000 genomes]
rs7797772	0.86[ASN][1000 genomes]
rs896308	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv515738	chr7:50476109-50494207	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50483000-50486800	Enhancers	Fetal Thymus	thymus
2	chr7:50483400-50488800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:50484600-50489000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:50484600-50489000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:50484800-50488400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:50484800-50488800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:50485000-50490800	Weak transcription	Spleen	Spleen
8	chr7:50485400-50490400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:50486000-50486600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:50486000-50486800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:50486000-50486800	Enhancers	Fetal Intestine Small	intestine
12	chr7:50486000-50486800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr7:50486000-50486800	Enhancers	K562	blood
14	chr7:50486000-50487000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:50486200-50487000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:50486200-50487000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:50486200-50513200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr7:50486400-50486600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr7:50486400-50486600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:50486400-50488800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:50486400-50491600	Weak transcription	Primary B cells from peripheral blood	blood

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