Variant report

Variant	rs780046
Chromosome Location	chr2:125101357-125101358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1946552	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1946553	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2553629	0.81[CEU][hapmap]
rs2565761	0.85[CHB][hapmap]
rs720477	0.91[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs779981	0.91[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs779998	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs779999	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs780000	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs780045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs780057	0.80[CEU][hapmap];0.91[CHB][hapmap]
rs780059	0.91[CEU][hapmap];0.92[CHB][hapmap]
rs780060	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs796641	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs811902	0.86[CEU][hapmap];0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv523624	chr2:125099924-125112975	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125101200-125101400	Flanking Active TSS	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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