Variant report
| Variant | rs811902 |
|---|---|
| Chromosome Location | chr2:125103233-125103234 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:125097769..125099451-chr2:125102621..125104236,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs2584358 | 0.85[ASN][1000 genomes] |
| rs720477 | 0.82[CHB][hapmap];0.82[GIH][hapmap];0.83[MEX][hapmap];0.93[MKK][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes] |
| rs779981 | 0.82[CHB][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.81[TSI][hapmap] |
| rs779998 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs779999 | 0.85[CEU][hapmap];0.91[CHB][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs780000 | 0.82[AMR][1000 genomes] |
| rs780045 | 0.86[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap] |
| rs780046 | 0.86[CEU][hapmap];0.87[CHB][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs780057 | 0.82[GIH][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.81[TSI][hapmap] |
| rs780060 | 0.80[GIH][hapmap];0.83[MEX][hapmap];0.93[MKK][hapmap];0.81[TSI][hapmap] |
| rs796641 | 0.87[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874989 | chr2:124892592-125176030 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv523624 | chr2:125099924-125112975 | Flanking Active TSS Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs811902 | GLI2 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
