Variant report

Variant	rs7800480
Chromosome Location	chr7:78223398-78223399
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10485908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10485911	1.00[ASW][hapmap]
rs73378221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73378222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7792998	1.00[ASN][1000 genomes]
rs7812172	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78218000-78223400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:78218200-78223400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:78218200-78223400	Weak transcription	Brain Angular Gyrus	brain
4	chr7:78218200-78223400	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:78218400-78224400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:78218800-78223400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:78219000-78258600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:78222400-78233600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:78222800-78223600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:78222800-78224200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:78223000-78224400	Enhancers	Brain Substantia Nigra	brain
12	chr7:78223200-78223600	Enhancers	Brain Anterior Caudate	brain
13	chr7:78223200-78223600	Enhancers	Brain Cingulate Gyrus	brain
14	chr7:78223200-78223800	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links