Variant report

Variant	rs10485911
Chromosome Location	chr7:78327299-78327300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1012955	1.00[CHB][hapmap]
rs10244070	1.00[CHB][hapmap]
rs10953690	1.00[CHB][hapmap]
rs11514934	0.82[CEU][hapmap]
rs11773635	1.00[CHD][hapmap]
rs1207863	1.00[CHB][hapmap]
rs1207864	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1207865	1.00[CHB][hapmap]
rs1207866	1.00[CHD][hapmap]
rs1207867	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1207894	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12705771	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1496767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1496772	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496773	0.81[EUR][1000 genomes]
rs16886265	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16886302	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151258	0.81[EUR][1000 genomes]
rs17151261	0.81[EUR][1000 genomes]
rs17151525	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17151530	1.00[CHB][hapmap]
rs17161332	0.81[EUR][1000 genomes]
rs17382188	0.82[CEU][hapmap]
rs17383882	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17385455	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17450323	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[ASN][1000 genomes]
rs17450926	1.00[ASN][1000 genomes]
rs1845921	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs1989977	1.00[CHB][hapmap]
rs1989978	1.00[CHB][hapmap]
rs2362942	0.82[CEU][hapmap]
rs246463	1.00[CHB][hapmap]
rs2525808	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2774059	1.00[CHB][hapmap]
rs35696843	0.86[EUR][1000 genomes]
rs37847	1.00[CHB][hapmap]
rs37848	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs37850	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs37862	1.00[CHB][hapmap]
rs37863	1.00[CHB][hapmap]
rs37871	1.00[CHB][hapmap]
rs37872	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs37873	1.00[CHB][hapmap]
rs37884	1.00[CHB][hapmap]
rs39731	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs55795881	0.81[EUR][1000 genomes]
rs56364307	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60460465	0.86[EUR][1000 genomes]
rs6466265	1.00[CHD][hapmap]
rs6947321	0.82[CEU][hapmap]
rs725555	1.00[CHD][hapmap]
rs73380292	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73702968	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780363	1.00[CHB][hapmap]
rs7800480	1.00[ASW][hapmap]
rs886472	1.00[CHB][hapmap]
rs886473	1.00[CHB][hapmap]
rs886474	1.00[CHB][hapmap]
rs970757	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv888509	chr7:78307944-78327299	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78313800-78334200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:78318400-78327400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:78322200-78328800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:78326200-78327600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:78326800-78328000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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