Variant report

Variant	rs11514934
Chromosome Location	chr7:78280455-78280456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10485911	0.82[CEU][hapmap]
rs12538564	1.00[LWK][hapmap]
rs1496767	0.82[CEU][hapmap]
rs1496773	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes]
rs16886302	0.82[CEU][hapmap]
rs17151199	0.90[JPT][hapmap]
rs17151258	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes]
rs17151261	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes]
rs17161332	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes]
rs17382188	1.00[CEU][hapmap]
rs1845921	1.00[CEU][hapmap]
rs2362942	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57530690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60793047	1.00[AFR][1000 genomes]
rs6947321	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv464597	chr7:78269375-78301419	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv607656	chr7:78269375-78301419	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78279600-78281200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:78279600-78281400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:78280000-78280600	Enhancers	Brain Cingulate Gyrus	brain
4	chr7:78280200-78280800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:78280200-78281400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:78280400-78281400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:78280400-78281400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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