Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10485911	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11514934	0.82[CEU][hapmap]
rs1496767	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1496772	1.00[ASN][1000 genomes]
rs16886265	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17151525	0.82[CEU][hapmap]
rs17382188	0.82[CEU][hapmap]
rs17383882	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17385455	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17450323	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17450926	1.00[ASN][1000 genomes]
rs1845921	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs2362942	0.82[CEU][hapmap]
rs35696843	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55795881	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55917954	0.83[AMR][1000 genomes]
rs56364307	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60460465	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6947321	0.82[CEU][hapmap]
rs73380292	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73702968	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78355600-78363400	Weak transcription	Brain Anterior Caudate	brain
2	chr7:78361000-78363200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:78361600-78363800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:78361600-78372000	Weak transcription	Aorta	Aorta
5	chr7:78362400-78366200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:78362800-78372200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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