Variant report

Variant	rs17450323
Chromosome Location	chr7:78342354-78342355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1012955	1.00[CHB][hapmap]
rs10244070	1.00[CHB][hapmap]
rs10485911	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[ASN][1000 genomes]
rs10953690	1.00[CHB][hapmap]
rs11773635	1.00[CHD][hapmap]
rs1207863	1.00[CHB][hapmap]
rs1207864	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1207865	1.00[CHB][hapmap]
rs1207866	1.00[CHD][hapmap]
rs1207867	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1207894	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12705771	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1496767	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap]
rs1496772	1.00[ASN][1000 genomes]
rs16886302	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17151352	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs17151376	1.00[CEU][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes]
rs17151525	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17151530	1.00[CHB][hapmap]
rs17383882	1.00[ASN][1000 genomes]
rs17385455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17450926	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1989977	1.00[CHB][hapmap]
rs1989978	1.00[CHB][hapmap]
rs246463	1.00[CHB][hapmap]
rs2525808	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2774059	1.00[CHB][hapmap]
rs323140	0.89[TSI][hapmap]
rs323144	0.89[TSI][hapmap]
rs323166	0.81[TSI][hapmap]
rs37847	1.00[CHB][hapmap]
rs37848	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs37850	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs37862	1.00[CHB][hapmap]
rs37863	1.00[CHB][hapmap]
rs37871	1.00[CHB][hapmap]
rs37872	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs37873	1.00[CHB][hapmap]
rs37884	1.00[CHB][hapmap]
rs39731	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs55934210	0.90[AFR][1000 genomes]
rs56364307	1.00[ASN][1000 genomes]
rs6466265	1.00[CHD][hapmap]
rs725555	1.00[CHD][hapmap]
rs73380292	1.00[ASN][1000 genomes]
rs73702963	0.84[AFR][1000 genomes]
rs73702968	1.00[ASN][1000 genomes]
rs7780363	1.00[CHB][hapmap]
rs886472	1.00[CHB][hapmap]
rs886473	1.00[CHB][hapmap]
rs886474	1.00[CHB][hapmap]
rs970757	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78336400-78343800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:78339800-78342600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:78341000-78343400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:78341200-78343400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:78341200-78346800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:78341400-78343200	Enhancers	Brain Hippocampus Middle	brain
7	chr7:78341400-78344600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr7:78341400-78345400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:78341600-78342800	Weak transcription	Brain Angular Gyrus	brain
10	chr7:78341800-78342800	Weak transcription	Brain Anterior Caudate	brain
11	chr7:78341800-78344800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:78342000-78343600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:78342200-78343400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:78342200-78343800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:78342200-78346000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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