Variant report

Variant	rs17151352
Chromosome Location	chr7:78346314-78346315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10485915	0.96[ASN][1000 genomes]
rs10953668	0.85[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs12112639	0.85[CHB][hapmap];0.83[JPT][hapmap];0.93[ASN][1000 genomes]
rs17151376	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17385455	0.91[CEU][hapmap];0.81[AMR][1000 genomes]
rs17450323	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs323144	0.87[YRI][hapmap]
rs56714990	0.99[ASN][1000 genomes]
rs73701679	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78341200-78346800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:78343600-78346600	Weak transcription	Pancreas	Pancrea
3	chr7:78343600-78347600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:78344600-78347400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:78344600-78348200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:78344600-78348200	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:78345200-78350200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:78345600-78346800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:78345600-78348200	Enhancers	Fetal Heart	heart
10	chr7:78346000-78346400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:78346000-78346800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:78346000-78346800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:78346200-78346400	Enhancers	Aorta	Aorta
14	chr7:78346200-78346600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:78346200-78346600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr7:78346200-78346600	Enhancers	Placenta	Placenta
17	chr7:78346200-78346600	Enhancers	Left Ventricle	heart
18	chr7:78346200-78346800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:78346200-78346800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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