Variant report

Variant	rs10485915
Chromosome Location	chr7:78349401-78349402
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10253331	0.81[ASN][1000 genomes]
rs10485910	1.00[CEU][hapmap]
rs10485917	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11971579	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12112639	0.90[ASN][1000 genomes]
rs1390822	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16886300	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16886301	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16886304	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17151352	0.96[ASN][1000 genomes]
rs17151376	0.99[ASN][1000 genomes]
rs17151383	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs56714990	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58148748	0.81[EUR][1000 genomes]
rs58597335	0.81[ASN][1000 genomes]
rs59536455	0.85[EUR][1000 genomes]
rs73380296	0.85[EUR][1000 genomes]
rs73701679	0.90[ASN][1000 genomes]
rs9969351	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9969370	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78345200-78350200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78346800-78352800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:78346800-78361400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:78349000-78352200	Enhancers	Fetal Heart	heart
5	chr7:78349200-78350000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:78349200-78350000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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