Variant report
| Variant | rs1390822 |
|---|---|
| Chromosome Location | chr7:78354494-78354495 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10485910 | 1.00[CEU][hapmap] |
| rs10485915 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs10485917 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs10485918 | 0.94[AFR][1000 genomes] |
| rs11760265 | 0.88[AFR][1000 genomes] |
| rs11762589 | 0.94[AFR][1000 genomes] |
| rs11971579 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs12531389 | 0.94[AFR][1000 genomes] |
| rs16886300 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16886301 | 1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16886304 | 1.00[CEU][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs17151383 | 1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[EUR][1000 genomes] |
| rs17151416 | 0.90[YRI][hapmap] |
| rs17151445 | 0.90[YRI][hapmap] |
| rs4370470 | 1.00[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs56714990 | 0.81[EUR][1000 genomes] |
| rs58148748 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59536455 | 0.85[EUR][1000 genomes] |
| rs73152428 | 0.88[AFR][1000 genomes] |
| rs73380296 | 0.85[EUR][1000 genomes] |
| rs7789893 | 0.88[AFR][1000 genomes] |
| rs7790100 | 0.95[EUR][1000 genomes] |
| rs9969351 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs9969370 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022199 | chr7:78054639-78469370 | Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv538986 | chr7:78054639-78469370 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1019355 | chr7:78319575-78399845 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv607657 | chr7:78329795-78483211 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv1801917 | chr7:78353677-78354688 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:78346800-78361400 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
