Variant report

Variant	rs16886301
Chromosome Location	chr7:78359682-78359683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78354533..78356785-chr7:78357118..78359771,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10242583	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10485910	1.00[CEU][hapmap]
rs10485915	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10485917	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485918	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10485920	0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs10953686	0.82[ASN][1000 genomes]
rs11760265	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11762589	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11971579	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1207873	0.85[ASN][1000 genomes]
rs12531389	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1390822	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16886300	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16886304	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16886321	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17151383	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17151403	0.80[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs17151416	0.80[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.86[ASN][1000 genomes]
rs17151445	0.80[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs34048176	0.87[ASN][1000 genomes]
rs37853	0.83[JPT][hapmap]
rs4370470	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4730487	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs56714990	0.81[EUR][1000 genomes]
rs58148748	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59536455	0.85[EUR][1000 genomes]
rs73152428	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs73152456	0.85[ASN][1000 genomes]
rs73380296	0.85[EUR][1000 genomes]
rs739897	0.86[ASN][1000 genomes]
rs7789893	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7790100	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7810385	0.80[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs877682	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9969351	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9969370	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78346800-78361400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:78355600-78363400	Weak transcription	Brain Anterior Caudate	brain
3	chr7:78359200-78361200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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