Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78291912..78294336-chr7:78364604..78366410,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10242583	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10485917	0.86[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs10485918	0.94[ASN][1000 genomes]
rs10485920	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10953686	0.85[ASN][1000 genomes]
rs11760265	0.94[ASN][1000 genomes]
rs11762589	0.94[ASN][1000 genomes]
rs1207873	0.90[ASN][1000 genomes]
rs12531389	0.89[ASN][1000 genomes]
rs16886300	0.86[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs16886301	0.80[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs16886304	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16886321	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17151416	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17151445	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs34048176	0.91[ASN][1000 genomes]
rs37853	0.89[JPT][hapmap]
rs4370470	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4730487	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs58148748	0.98[ASN][1000 genomes]
rs73152428	0.96[ASN][1000 genomes]
rs73152456	0.89[ASN][1000 genomes]
rs739897	0.90[ASN][1000 genomes]
rs7789893	0.98[ASN][1000 genomes]
rs7790100	0.98[ASN][1000 genomes]
rs7810385	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs877682	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78361600-78372000	Weak transcription	Aorta	Aorta
2	chr7:78362400-78366200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:78362800-78372200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:78363600-78380400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:78363800-78365200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:78363800-78366400	Weak transcription	Brain Angular Gyrus	brain
7	chr7:78364000-78366200	Weak transcription	Brain Anterior Caudate	brain
8	chr7:78364000-78366400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:78364200-78365600	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:78364200-78365800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:78364200-78372000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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