Variant report

Variant	rs37853
Chromosome Location	chr7:78416116-78416117
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10242583	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes]
rs10485917	0.83[JPT][hapmap]
rs10485920	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs16886300	0.83[JPT][hapmap]
rs16886301	0.83[JPT][hapmap]
rs16886304	0.88[JPT][hapmap]
rs16886321	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes]
rs17151403	0.89[JPT][hapmap]
rs17151416	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs17151445	1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes]
rs34048176	0.83[AMR][1000 genomes]
rs4370470	0.88[JPT][hapmap]
rs4730487	0.88[JPT][hapmap]
rs7810385	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes]
rs877682	1.00[CEU][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949647	chr7:78406281-78495913	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links