Variant report

Variant	rs7810385
Chromosome Location	chr7:78407126-78407127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10242583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485917	0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10485918	0.87[ASN][1000 genomes]
rs10485920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10953686	0.92[ASN][1000 genomes]
rs11760265	0.87[ASN][1000 genomes]
rs11762589	0.87[ASN][1000 genomes]
rs1207873	0.95[ASN][1000 genomes]
rs12531389	0.82[ASN][1000 genomes]
rs16886300	0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs16886301	0.80[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs16886304	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16886321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151403	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17151416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17151445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34048176	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37853	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs4370470	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730487	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs58148748	0.91[ASN][1000 genomes]
rs73152428	0.89[ASN][1000 genomes]
rs73152456	0.89[ASN][1000 genomes]
rs739897	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7789893	0.91[ASN][1000 genomes]
rs7790100	0.91[ASN][1000 genomes]
rs877682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949647	chr7:78406281-78495913	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78402000-78407400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:78402000-78413000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:78406600-78407600	Enhancers	Brain Hippocampus Middle	brain
4	chr7:78406600-78407600	Enhancers	Brain Substantia Nigra	brain
5	chr7:78406800-78407600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:78406800-78407800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:78406800-78407800	Enhancers	Brain Anterior Caudate	brain
8	chr7:78406800-78407800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr7:78406800-78408000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:78407000-78407600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:78407000-78407600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:78407000-78407600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:78407000-78407600	Enhancers	NHLF	lung
14	chr7:78407000-78407800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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