Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10242583	0.89[ASN][1000 genomes]
rs10485917	0.85[ASN][1000 genomes]
rs10485918	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10485920	0.95[ASN][1000 genomes]
rs10953686	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11760265	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11762589	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1207873	0.89[ASN][1000 genomes]
rs12531389	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16886300	0.85[ASN][1000 genomes]
rs16886301	0.85[ASN][1000 genomes]
rs16886304	0.89[ASN][1000 genomes]
rs16886321	0.89[ASN][1000 genomes]
rs17151403	0.89[ASN][1000 genomes]
rs17151416	0.91[ASN][1000 genomes]
rs17151445	0.89[ASN][1000 genomes]
rs34048176	0.89[ASN][1000 genomes]
rs4370470	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4730487	0.89[ASN][1000 genomes]
rs58148748	0.89[ASN][1000 genomes]
rs73152428	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs739897	0.91[ASN][1000 genomes]
rs7789893	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7790100	0.89[ASN][1000 genomes]
rs7810385	0.89[ASN][1000 genomes]
rs877682	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78363600-78380400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78368000-78375600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:78371000-78375400	Weak transcription	Fetal Brain Male	brain
4	chr7:78372400-78375200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:78372400-78375600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:78372400-78376800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:78372400-78391600	Weak transcription	Pancreas	Pancrea
8	chr7:78372400-78395200	Weak transcription	Aorta	Aorta
9	chr7:78373800-78378400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:78374000-78375400	Enhancers	Brain Cingulate Gyrus	brain
11	chr7:78374200-78375000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:78374200-78375000	Enhancers	Fetal Brain Female	brain
13	chr7:78374200-78377400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:78374200-78379200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr7:78374200-78379200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:78374400-78374600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:78374400-78376000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:78374400-78377000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:78374400-78377600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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