Variant report

Variant	rs877682
Chromosome Location	chr7:78395400-78395401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10242583	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10485917	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10485918	0.87[ASN][1000 genomes]
rs10485920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10953686	0.92[ASN][1000 genomes]
rs11760265	0.87[ASN][1000 genomes]
rs11762589	0.87[ASN][1000 genomes]
rs1207873	0.95[ASN][1000 genomes]
rs12531389	0.82[ASN][1000 genomes]
rs16886300	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16886301	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16886304	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16886321	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151403	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17151416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17151445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34048176	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs37853	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs4370470	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730487	0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs58148748	0.91[ASN][1000 genomes]
rs73152428	0.89[ASN][1000 genomes]
rs73152456	0.89[ASN][1000 genomes]
rs739897	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7789893	0.91[ASN][1000 genomes]
rs7790100	0.91[ASN][1000 genomes]
rs7810385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78386200-78397600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:78391000-78395400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:78391800-78398800	Weak transcription	Pancreas	Pancrea
4	chr7:78393600-78396200	Enhancers	Brain Hippocampus Middle	brain
5	chr7:78394000-78395800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr7:78394000-78396000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr7:78394000-78396600	Enhancers	Psoas Muscle	Psoas
8	chr7:78394000-78397000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:78394200-78395600	Enhancers	Brain Substantia Nigra	brain
10	chr7:78394400-78395400	Weak transcription	Fetal Brain Male	brain
11	chr7:78394400-78397400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:78394400-78397600	Weak transcription	Brain Angular Gyrus	brain
13	chr7:78394400-78397600	Weak transcription	Fetal Heart	heart
14	chr7:78394600-78396600	Weak transcription	Fetal Brain Female	brain
15	chr7:78395000-78395600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:78395000-78396200	Enhancers	Brain Anterior Caudate	brain
17	chr7:78395200-78395400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:78395200-78395600	Enhancers	Aorta	Aorta
19	chr7:78395200-78395800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:78395200-78395800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:78395200-78396200	Enhancers	Brain Cingulate Gyrus	brain
22	chr7:78395200-78396200	Enhancers	Colon Smooth Muscle	Colon
23	chr7:78395400-78395600	Enhancers	Stomach Smooth Muscle	stomach
24	chr7:78395400-78395800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr7:78395400-78396200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr7:78395400-78396600	Enhancers	Fetal Brain Male	brain
27	chr7:78395400-78397800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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