Variant report

Variant	rs1496772
Chromosome Location	chr7:78315217-78315218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10485911	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496767	0.90[EUR][1000 genomes]
rs1496773	0.92[EUR][1000 genomes]
rs16886265	0.86[EUR][1000 genomes]
rs16886302	1.00[ASN][1000 genomes]
rs17151258	0.92[EUR][1000 genomes]
rs17151261	0.92[EUR][1000 genomes]
rs17161332	0.92[EUR][1000 genomes]
rs17383882	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17385455	1.00[ASN][1000 genomes]
rs17450323	1.00[ASN][1000 genomes]
rs17450926	1.00[ASN][1000 genomes]
rs1845921	0.83[EUR][1000 genomes]
rs35696843	0.83[EUR][1000 genomes]
rs56364307	1.00[ASN][1000 genomes]
rs60460465	0.83[EUR][1000 genomes]
rs73380238	0.87[EUR][1000 genomes]
rs73380292	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73702968	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv888509	chr7:78307944-78327299	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78301800-78321600	Weak transcription	Fetal Brain Female	brain
2	chr7:78313200-78319600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:78313800-78316400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:78313800-78321600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:78313800-78334200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:78314800-78316200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:78315000-78315800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:78315000-78315800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:78315000-78316400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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