Variant report

Variant	rs17161332
Chromosome Location	chr7:78304878-78304879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10485911	0.81[EUR][1000 genomes]
rs11514934	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes]
rs1496767	0.83[EUR][1000 genomes]
rs1496772	0.92[EUR][1000 genomes]
rs1496773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151258	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17151261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17382188	1.00[CEU][hapmap]
rs17383882	0.83[EUR][1000 genomes]
rs1845921	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2362942	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes]
rs57530690	1.00[AFR][1000 genomes]
rs60793047	1.00[AFR][1000 genomes]
rs6947321	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs73380238	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78301000-78305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78301800-78305000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:78301800-78307000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:78301800-78321600	Weak transcription	Fetal Brain Female	brain
5	chr7:78304200-78305800	Enhancers	Brain Anterior Caudate	brain
6	chr7:78304600-78305400	Weak transcription	Brain Angular Gyrus	brain
7	chr7:78304800-78305600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:78304800-78313000	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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