Variant report

Variant	rs7800789
Chromosome Location	chr7:102664887-102664888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10230292	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230700	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10240086	1.00[AMR][1000 genomes]
rs2098447	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4729869	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56938507	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61187383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61676871	1.00[AMR][1000 genomes]
rs73408254	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408255	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408259	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408285	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408286	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410129	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7807900	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv3374257	chr7:102636550-102671589	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102640400-102666800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:102664600-102665600	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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