Variant report

Variant	rs7801895
Chromosome Location	chr7:126927463-126927464
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10243876	1.00[JPT][hapmap]
rs11563350	1.00[CEU][hapmap]
rs11563662	1.00[CEU][hapmap]
rs17866467	1.00[CEU][hapmap]
rs17867036	1.00[CEU][hapmap]
rs28947798	1.00[CEU][hapmap]
rs28947799	1.00[CEU][hapmap]
rs28947800	1.00[CEU][hapmap]
rs28947801	1.00[CEU][hapmap]
rs28947802	1.00[CEU][hapmap]
rs6957728	1.00[JPT][hapmap]
rs916599	0.92[ASN][1000 genomes]
rs916600	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126926200-126927800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:126926600-126927800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr7:126926800-126928200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:126926800-126928200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:126927000-126927800	Enhancers	Esophagus	oesophagus
6	chr7:126927000-126927800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr7:126927000-126927800	Enhancers	HMEC	breast
8	chr7:126927000-126928200	Enhancers	NHEK	skin
9	chr7:126927200-126927800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:126927400-126927800	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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