Variant report

Variant	rs916600
Chromosome Location	chr7:126927114-126927115
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1592376	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs6957728	1.00[JPT][hapmap]
rs7801895	0.92[ASN][1000 genomes]
rs916599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126926200-126927800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:126926600-126927800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr7:126926800-126927400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:126926800-126928200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:126926800-126928200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:126927000-126927800	Enhancers	Esophagus	oesophagus
7	chr7:126927000-126927800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr7:126927000-126927800	Enhancers	HMEC	breast
9	chr7:126927000-126928200	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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