Variant report

Variant	rs7802611
Chromosome Location	chr7:16738039-16738040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16737077..16739707-chr7:16779639..16781235,2	K562	blood:
2	chr7:16734598..16736138-chr7:16737781..16740670,2	K562	blood:
3	chr7:16733508..16735059-chr7:16737961..16740377,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10228088	1.00[CEU][hapmap]
rs10228338	1.00[CEU][hapmap]
rs10237800	1.00[CEU][hapmap]
rs10260136	1.00[CEU][hapmap]
rs10273406	1.00[CEU][hapmap]
rs10280750	1.00[CEU][hapmap]
rs10282680	1.00[CEU][hapmap]
rs11976539	1.00[CEU][hapmap]
rs2177784	1.00[CEU][hapmap]
rs6968207	1.00[CEU][hapmap]
rs73067639	1.00[AMR][1000 genomes]
rs7777674	1.00[CEU][hapmap]
rs818492	1.00[CEU][hapmap]
rs818582	1.00[CEU][hapmap]
rs818584	1.00[CEU][hapmap]
rs9690166	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv830912	chr7:16623196-16791974	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv464397	chr7:16709708-16782767	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv606338	chr7:16709708-16782767	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv887760	chr7:16714974-16776257	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16701800-16752800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:16708800-16747800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:16710200-16752400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:16714000-16741800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:16714000-16747200	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:16714000-16748400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:16719200-16741800	Strong transcription	A549	lung
8	chr7:16719200-16746800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:16720800-16748800	Strong transcription	Placenta	Placenta
10	chr7:16724600-16747200	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:16725200-16739000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:16725200-16749000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:16725400-16746000	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr7:16725400-16749400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:16726800-16740600	Strong transcription	Fetal Intestine Large	intestine
16	chr7:16726800-16750600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:16727600-16742400	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:16727600-16748800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:16727800-16749000	Strong transcription	Dnd41	blood
20	chr7:16728400-16746400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr7:16728600-16742400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:16728600-16747400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:16729000-16741000	Strong transcription	HMEC	breast
24	chr7:16729000-16743000	Strong transcription	Fetal Thymus	thymus
25	chr7:16729000-16746800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr7:16729200-16741600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr7:16729200-16743000	Strong transcription	Primary T cells from cord blood	blood
28	chr7:16729200-16746200	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr7:16729200-16746400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:16729400-16740000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr7:16729400-16740600	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr7:16729400-16740600	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr7:16729400-16746000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr7:16729400-16746200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:16729400-16746200	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr7:16730400-16740400	Strong transcription	Fetal Muscle Leg	muscle
37	chr7:16730400-16741000	Strong transcription	Left Ventricle	heart
38	chr7:16730400-16747000	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr7:16730600-16746000	Strong transcription	K562	blood
40	chr7:16730800-16741000	Strong transcription	Hela-S3	cervix
41	chr7:16730800-16746200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr7:16731000-16742000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr7:16732800-16740600	Strong transcription	Primary B cells from peripheral blood	blood
44	chr7:16733200-16741800	Strong transcription	Liver	Liver
45	chr7:16733800-16738200	Strong transcription	Primary B cells from cord blood	blood
46	chr7:16733800-16741000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr7:16734000-16739200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:16734000-16739200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr7:16734000-16739800	Strong transcription	Fetal Stomach	stomach
50	chr7:16734000-16746200	Strong transcription	Primary hematopoietic stem cells	blood

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