Variant report

Variant	rs818584
Chromosome Location	chr7:16691512-16691513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16688198..16692832-chr7:16694502..16698615,5	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10228088	1.00[CEU][hapmap]
rs10228338	1.00[CEU][hapmap]
rs10260136	1.00[CEU][hapmap]
rs10273406	1.00[CEU][hapmap]
rs10282680	1.00[CEU][hapmap]
rs2177784	1.00[CEU][hapmap]
rs6968207	1.00[CEU][hapmap]
rs7777674	1.00[CEU][hapmap]
rs7802611	1.00[CEU][hapmap]
rs818492	1.00[CEU][hapmap]
rs818582	1.00[CEU][hapmap]
rs9690166	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv830912	chr7:16623196-16791974	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16686600-16691600	Weak transcription	Pancreas	Pancrea
2	chr7:16686600-16705800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:16686800-16691600	Weak transcription	Esophagus	oesophagus
4	chr7:16686800-16697400	Weak transcription	Ovary	ovary
5	chr7:16686800-16700800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:16686800-16734400	Weak transcription	Lung	lung
7	chr7:16687600-16691600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:16687600-16692600	Enhancers	Primary T cells from cord blood	blood
9	chr7:16687600-16697400	Weak transcription	HSMMtube	muscle
10	chr7:16687600-16705200	Weak transcription	Fetal Thymus	thymus
11	chr7:16687600-16705400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr7:16687600-16730400	Weak transcription	Thymus	Thymus
13	chr7:16687800-16691600	Weak transcription	Fetal Lung	lung
14	chr7:16688000-16691600	Weak transcription	Primary B cells from cord blood	blood
15	chr7:16688000-16700800	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:16688200-16692600	Weak transcription	Gastric	stomach
17	chr7:16688200-16697400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:16688200-16697400	Weak transcription	Fetal Intestine Small	intestine
19	chr7:16688400-16691600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:16688400-16691600	Weak transcription	Left Ventricle	heart
21	chr7:16688400-16697200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:16688400-16697400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr7:16688400-16697400	Weak transcription	Fetal Muscle Leg	muscle
24	chr7:16688400-16700800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:16688400-16704200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr7:16688600-16691600	Weak transcription	NHLF	lung
27	chr7:16688600-16693400	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr7:16688600-16700200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr7:16688600-16700600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr7:16688600-16707000	Weak transcription	Brain Anterior Caudate	brain
31	chr7:16688800-16691600	Weak transcription	Placenta	Placenta
32	chr7:16688800-16691600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr7:16688800-16691600	Weak transcription	Stomach Mucosa	stomach
34	chr7:16688800-16692600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr7:16688800-16695400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr7:16688800-16700400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr7:16688800-16700400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr7:16688800-16700800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr7:16689000-16691600	Weak transcription	Brain Substantia Nigra	brain
40	chr7:16689000-16692600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:16689000-16696600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr7:16689000-16696800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr7:16689000-16697200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr7:16689000-16697200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:16689000-16700400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr7:16689000-16700400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr7:16689200-16691600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr7:16689200-16691600	Weak transcription	Psoas Muscle	Psoas
49	chr7:16689200-16692000	Enhancers	A549	lung
50	chr7:16689200-16695200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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