Variant report

Variant	rs7802623
Chromosome Location	chr7:38779989-38779990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:38777448..38781271-chr7:38790893..38794034,3	K562	blood:
2	chr7:38779167..38781371-chr7:38782858..38784712,2	MCF-7	breast:
3	chr7:38775769..38777422-chr7:38778877..38780548,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10224856	0.94[AFR][1000 genomes]
rs10225415	0.94[AFR][1000 genomes]
rs10254354	0.94[AFR][1000 genomes]
rs10951574	0.91[AFR][1000 genomes]
rs12112381	0.82[AFR][1000 genomes]
rs2040878	0.91[AFR][1000 genomes]
rs2214667	0.86[AFR][1000 genomes]
rs2214668	0.89[AFR][1000 genomes]
rs2245773	0.89[AFR][1000 genomes]
rs2286089	0.91[AFR][1000 genomes]
rs2286093	0.91[AFR][1000 genomes]
rs2286101	0.91[AFR][1000 genomes]
rs2392599	0.91[AFR][1000 genomes]
rs4532515	0.83[AMR][1000 genomes]
rs4720300	0.89[AFR][1000 genomes]
rs4723780	0.89[AFR][1000 genomes]
rs4723781	0.86[AFR][1000 genomes]
rs4723784	0.91[AFR][1000 genomes]
rs4723787	0.88[AFR][1000 genomes]
rs5005159	1.00[AMR][1000 genomes]
rs57465190	0.90[AMR][1000 genomes]
rs57617719	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58040960	0.90[AMR][1000 genomes]
rs58134982	0.90[AMR][1000 genomes]
rs58454657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58621005	0.90[AMR][1000 genomes]
rs58647428	0.90[AMR][1000 genomes]
rs59190975	0.90[AMR][1000 genomes]
rs59245872	0.90[AMR][1000 genomes]
rs59351084	0.90[AMR][1000 genomes]
rs59642032	0.90[AMR][1000 genomes]
rs59847448	0.90[AMR][1000 genomes]
rs60551167	0.90[AMR][1000 genomes]
rs60866563	0.90[AMR][1000 genomes]
rs6949958	0.91[AFR][1000 genomes]
rs6951429	0.90[AFR][1000 genomes]
rs6975410	0.94[AFR][1000 genomes]
rs73368208	0.91[AMR][1000 genomes]
rs73368214	0.91[AMR][1000 genomes]
rs73368216	1.00[AMR][1000 genomes]
rs73368217	1.00[AMR][1000 genomes]
rs73368223	1.00[AMR][1000 genomes]
rs73368230	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73368232	0.80[AMR][1000 genomes]
rs73368234	0.90[AMR][1000 genomes]
rs73368255	0.90[AMR][1000 genomes]
rs7787423	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38749000-38803600	Weak transcription	Fetal Brain Male	brain
2	chr7:38755000-38791200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:38757000-38784200	Weak transcription	HMEC	breast
4	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
5	chr7:38758600-38780600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:38758800-38780000	Weak transcription	Brain Substantia Nigra	brain
7	chr7:38759200-38810200	Weak transcription	A549	lung
8	chr7:38759400-38810600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:38759600-38784200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:38759800-38780600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:38760000-38799800	Weak transcription	HUVEC	blood vessel
12	chr7:38760600-38800200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr7:38761000-38820400	Weak transcription	Stomach Mucosa	stomach
14	chr7:38761200-38785400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:38762600-38793200	Weak transcription	Hela-S3	cervix
16	chr7:38763200-38828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:38763400-38780400	Weak transcription	Fetal Kidney	kidney
18	chr7:38763400-38792600	Weak transcription	Small Intestine	intestine
19	chr7:38763400-38828800	Weak transcription	HepG2	liver
20	chr7:38763800-38791600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr7:38764400-38787600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:38764800-38784200	Weak transcription	NHEK	skin
23	chr7:38765400-38784200	Weak transcription	NHLF	lung
24	chr7:38765400-38789600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:38765400-38802800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr7:38765600-38784200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:38765600-38784400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:38766000-38784200	Weak transcription	NH-A	brain
29	chr7:38766000-38791800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr7:38766200-38780000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr7:38766200-38783400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:38766600-38780600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr7:38766600-38782600	Weak transcription	Colon Smooth Muscle	Colon
34	chr7:38766600-38791600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr7:38766800-38784200	Weak transcription	NHDF-Ad	bronchial
36	chr7:38767200-38780200	Weak transcription	Ovary	ovary
37	chr7:38767200-38780400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr7:38767200-38792600	Weak transcription	Colonic Mucosa	Colon
39	chr7:38767200-38802800	Weak transcription	Right Ventricle	heart
40	chr7:38767200-38805800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr7:38767600-38780400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr7:38767800-38780200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr7:38768000-38782800	Weak transcription	Fetal Thymus	thymus
44	chr7:38768200-38780600	Weak transcription	GM12878-XiMat	blood
45	chr7:38768400-38791200	Weak transcription	Brain Germinal Matrix	brain
46	chr7:38768400-38791800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr7:38768600-38782000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:38768600-38784600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr7:38768600-38786000	Weak transcription	Esophagus	oesophagus
50	chr7:38768600-38786200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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