Variant report

Variant	rs7802695
Chromosome Location	chr7:127434664-127434665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:127433838..127436136-chr7:127441582..127444272,2	K562	blood:
2	chr7:127434414..127436679-chr7:127478361..127480187,2	K562	blood:
3	chr7:127433060..127435877-chr7:127436544..127438301,2	K562	blood:
4	chr7:127433199..127438037-chr7:127438962..127443082,8	K562	blood:
5	chr7:127425728..127430973-chr7:127434300..127441103,9	K562	blood:
6	chr7:127429473..127432507-chr7:127434454..127438684,5	K562	blood:
7	chr7:127432543..127434957-chr7:127674318..127675845,2	MCF-7	breast:

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11761621	0.85[AMR][1000 genomes]
rs3735640	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3757769	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs3823996	0.81[CHB][hapmap]
rs56280073	1.00[ASN][1000 genomes]
rs57707296	0.82[ASN][1000 genomes]
rs7799837	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831123	chr7:127289511-127510396	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1030387	chr7:127348973-127455890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3417782	chr7:127434572-127434858	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127379200-127437400	Weak transcription	Fetal Stomach	stomach
2	chr7:127382000-127473000	Weak transcription	Hela-S3	cervix
3	chr7:127395800-127437200	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:127401000-127447600	Weak transcription	Fetal Intestine Large	intestine
5	chr7:127401000-127447800	Weak transcription	Fetal Intestine Small	intestine
6	chr7:127407400-127439200	Weak transcription	Primary T cells from cord blood	blood
7	chr7:127407400-127447600	Weak transcription	Dnd41	blood
8	chr7:127411400-127437200	Weak transcription	Left Ventricle	heart
9	chr7:127419800-127435200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr7:127422400-127445400	Weak transcription	Aorta	Aorta
11	chr7:127423000-127437200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:127423000-127437400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:127423000-127437800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:127423000-127437800	Weak transcription	Fetal Lung	lung
15	chr7:127423000-127449200	Weak transcription	Small Intestine	intestine
16	chr7:127423200-127437400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:127423200-127440000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:127423200-127447600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr7:127423400-127449000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:127423600-127437800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:127423600-127447400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:127425800-127436400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:127426200-127439400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr7:127426600-127438200	Weak transcription	HSMMtube	muscle
25	chr7:127427600-127438800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr7:127427600-127447600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr7:127427600-127447600	Weak transcription	Thymus	Thymus
28	chr7:127427800-127437800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:127428000-127437200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:127428200-127435800	Weak transcription	HUVEC	blood vessel
31	chr7:127428200-127437400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:127429400-127437200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr7:127429800-127447600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr7:127429800-127448200	Weak transcription	A549	lung
35	chr7:127430400-127437200	Weak transcription	Pancreas	Pancrea
36	chr7:127430400-127437400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:127430800-127444400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:127431000-127435400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:127431000-127447600	Weak transcription	Fetal Thymus	thymus
40	chr7:127431000-127449000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr7:127431400-127447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:127431600-127449400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:127432000-127442800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr7:127432000-127447600	Weak transcription	NHLF	lung
45	chr7:127432000-127448800	Weak transcription	NHDF-Ad	bronchial
46	chr7:127432400-127435000	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr7:127432400-127435200	Enhancers	Brain Anterior Caudate	brain
48	chr7:127432400-127435200	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr7:127432400-127437400	Weak transcription	NHEK	skin
50	chr7:127432400-127444400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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