Variant report

Variant	rs7805314
Chromosome Location	chr7:118076277-118076278
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11761947	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11768889	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13224397	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17584234	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17584359	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs194577	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs194578	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs194579	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs20598	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2192233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2192234	0.82[EUR][1000 genomes]
rs2402357	0.81[EUR][1000 genomes]
rs2402359	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34029977	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34847140	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35382009	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs39489	0.82[EUR][1000 genomes]
rs41945	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41946	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41947	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41948	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41949	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41950	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41951	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41952	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41953	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41954	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41955	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41956	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41957	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41958	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41959	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41960	0.84[EUR][1000 genomes]
rs41961	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41963	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41964	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41966	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41967	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41968	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41969	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41970	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41977	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41978	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41979	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41980	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41982	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41983	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41984	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41985	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41986	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41987	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41988	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41990	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41991	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41993	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41994	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41995	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41996	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41997	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs42234	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs42376	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4727865	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4730866	0.81[EUR][1000 genomes]
rs6466657	0.82[EUR][1000 genomes]
rs6651117	0.82[EUR][1000 genomes]
rs68189275	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6964858	0.81[EUR][1000 genomes]
rs71314617	0.82[EUR][1000 genomes]
rs881802	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv1804964	chr7:117960973-118188573	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv889094	chr7:117981820-118186543	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2829882	chr7:118009306-118222312	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv889095	chr7:118016847-118097679	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7805314	LSM8	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118073400-118077800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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