Variant report

Variant	rs881802
Chromosome Location	chr7:118099945-118099946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:118099915-118099992	MCF10A-Er-Src	breast:	n/a	chr7:118099915-118099938

No.	Distal block	Cell Line	Cell type
1	chr7:118093376..118094985-chr7:118098864..118100577,2	K562	blood:
2	chr7:118093376..118097334-chr7:118098069..118100577,4	K562	blood:
3	chr7:118098838..118101158-chr7:118104567..118106399,2	K562	blood:

Variant related genes	Relation type
ENSG00000222226	TF binding region

Extended variants
information (count: 76 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11761947	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11768889	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13224397	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17584234	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17584359	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs194577	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs194578	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs194579	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs20598	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2192233	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2192234	0.82[EUR][1000 genomes]
rs2402357	0.81[EUR][1000 genomes]
rs2402359	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34029977	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34847140	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35382009	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs39489	0.82[EUR][1000 genomes]
rs41945	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41946	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41947	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41948	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41949	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41950	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41951	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41952	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41953	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41954	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41955	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41956	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41957	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41958	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41959	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41960	0.84[EUR][1000 genomes]
rs41961	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41963	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41964	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41966	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41967	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41968	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41969	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41970	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41977	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41978	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41979	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41980	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41982	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41983	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41984	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41985	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41986	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41987	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41988	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41990	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41991	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41993	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41994	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41995	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41996	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41997	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs42234	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs42376	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4727865	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4730866	0.81[EUR][1000 genomes]
rs6466657	0.82[EUR][1000 genomes]
rs6651117	0.82[EUR][1000 genomes]
rs68189275	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6964858	0.81[EUR][1000 genomes]
rs71314617	0.82[EUR][1000 genomes]
rs7805314	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv1804964	chr7:117960973-118188573	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv889094	chr7:117981820-118186543	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2829882	chr7:118009306-118222312	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1806893	chr7:118093537-118160303	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1813338	chr7:118093537-118160303	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs881802	ANKRD7	cis	cerebellum	SCAN
rs881802	LSM8	cis	multi-tissue	Pritchard
rs881802	NAA38	cis	lymphoblastoid	seeQTL
rs881802	ANKRD7	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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