Variant report

Variant	rs7807332
Chromosome Location	chr7:96654505-96654506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr7:96653741-96654549	ECC-1	luminal epithelium:	n/a	n/a
2	MAX	chr7:96653637-96654598	ECC-1	luminal epithelium:	n/a	n/a
3	EP300	chr7:96653799-96654639	ECC-1	luminal epithelium:	n/a	chr7:96654546-96654562
4	ZBTB7A	chr7:96653707-96654613	ECC-1	luminal epithelium:	n/a	n/a
5	POLR2A	chr7:96629453-96654775	H1-neurons	neurons:	n/a	n/a
6	NFIC	chr7:96653889-96654516	ECC-1	luminal epithelium:	n/a	n/a
7	MAX	chr7:96653845-96654505	MCF-7	breast:	n/a	n/a
8	CTBP2	chr7:96652954-96654703	H1-hESC	embryonic stem cell:	n/a	n/a
9	ZBTB7A	chr7:96654057-96654607	ECC-1	luminal epithelium:	n/a	n/a
10	TAF1	chr7:96653384-96654602	H1-neurons	neurons:	n/a	n/a
11	HDAC2	chr7:96653804-96654521	MCF-7	breast:	n/a	n/a
12	TCF12	chr7:96653862-96654616	ECC-1	luminal epithelium:	n/a	n/a
13	BACH1	chr7:96654160-96654648	H1-hESC	embryonic stem cell:	n/a	n/a
14	CEBPB	chr7:96654047-96654507	ECC-1	luminal epithelium:	n/a	chr7:96654281-96654294
15	MAX	chr7:96654166-96654541	H1-hESC	embryonic stem cell:	n/a	n/a
16	SUZ12	chr7:96650021-96654621	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr7:96649850-96654722	H1-neurons	neurons:	n/a	n/a
18	MAX	chr7:96653774-96654591	ECC-1	luminal epithelium:	n/a	n/a
19	SP1	chr7:96654043-96654597	H1-hESC	embryonic stem cell:	n/a	chr7:96654295-96654305 chr7:96654545-96654554 chr7:96654544-96654554 chr7:96654544-96654553 chr7:96654294-96654306 chr7:96654543-96654555 chr7:96654544-96654553 chr7:96654544-96654554 chr7:96654295-96654304 chr7:96654294-96654306 chr7:96654543-96654555
20	TEAD4	chr7:96653823-96654529	ECC-1	luminal epithelium:	n/a	n/a
21	SP1	chr7:96653855-96654520	H1-hESC	embryonic stem cell:	n/a	chr7:96654295-96654305 chr7:96654294-96654306 chr7:96654295-96654304 chr7:96654294-96654306
22	HA-E2F1	chr7:96653981-96654582	MCF-7	breast:	n/a	chr7:96654545-96654554
23	MXI1	chr7:96652353-96654856	SK-N-SH	brain:	n/a	n/a
24	MAX	chr7:96653857-96654638	H1-hESC	embryonic stem cell:	n/a	n/a
25	REST	chr7:96624507-96656402	H1-neurons	neurons:	n/a	chr7:96626900-96626913 chr7:96628274-96628287 chr7:96653242-96653252 chr7:96638441-96638449 chr7:96644780-96644790 chr7:96627625-96627635 chr7:96628223-96628236 chr7:96655951-96655958 chr7:96625513-96625526 chr7:96635204-96635222 chr7:96634677-96634690 chr7:96628302-96628315 chr7:96652071-96652084 chr7:96650634-96650647 chr7:96628298-96628318 chr7:96628298-96628318
26	CEBPB	chr7:96654085-96654515	MCF-7	breast:	n/a	chr7:96654281-96654294

Variant related genes	Relation type
DLX5	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17600014	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17600042	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9769385	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs982346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96647000-96655200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
2	chr7:96652200-96654600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
3	chr7:96652400-96654600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:96652600-96654600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
5	chr7:96652600-96654600	Bivalent/Poised TSS	NHEK	skin
6	chr7:96653000-96654600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
7	chr7:96653200-96656600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr7:96653400-96654600	Bivalent/Poised TSS	HSMM	muscle
9	chr7:96653400-96654800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
10	chr7:96653800-96654600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
11	chr7:96653800-96654600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
12	chr7:96653800-96654600	Flanking Active TSS	Ovary	ovary
13	chr7:96654000-96654600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:96654000-96657200	Bivalent Enhancer	Fetal Brain Male	brain
15	chr7:96654200-96654600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
16	chr7:96654200-96654600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:96654200-96654600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:96654200-96654600	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:96654200-96654600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
20	chr7:96654200-96654600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:96654200-96654600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:96654200-96654600	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr7:96654200-96654600	Active TSS	Right Atrium	heart
24	chr7:96654200-96654600	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
25	chr7:96654200-96654600	Bivalent Enhancer	Spleen	Spleen
26	chr7:96654200-96654600	Flanking Active TSS	Osteobl	bone
27	chr7:96654200-96654800	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:96654200-96654800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:96654200-96654800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:96654200-96654800	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:96654200-96654800	Bivalent Enhancer	Esophagus	oesophagus
32	chr7:96654200-96655400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:96654200-96655400	Bivalent Enhancer	Brain Hippocampus Middle	brain
34	chr7:96654200-96655600	Weak transcription	Gastric	stomach
35	chr7:96654200-96655600	Weak transcription	Pancreas	Pancrea
36	chr7:96654200-96656800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:96654400-96654600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
38	chr7:96654400-96654600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr7:96654400-96654600	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
40	chr7:96654400-96654600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:96654400-96654600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
42	chr7:96654400-96654600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
43	chr7:96654400-96654600	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:96654400-96654600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:96654400-96654600	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
46	chr7:96654400-96654600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
47	chr7:96654400-96654600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
48	chr7:96654400-96654600	Bivalent Enhancer	Brain Substantia Nigra	brain
49	chr7:96654400-96654600	Flanking Bivalent TSS/Enh	Fetal Lung	lung
50	chr7:96654400-96654600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach

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