Variant report

Variant	rs9769385
Chromosome Location	chr7:96651985-96651986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17600014	0.87[ASN][1000 genomes]
rs17600042	0.87[ASN][1000 genomes]
rs55667160	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6951996	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7807332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs982346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96647000-96655200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
2	chr7:96648000-96654000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:96648400-96652000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:96650000-96654200	Active TSS	Osteobl	bone
5	chr7:96650200-96652200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
6	chr7:96650200-96652400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
7	chr7:96650200-96653200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:96650400-96652000	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:96650400-96652000	ZNF genes & repeats	Ovary	ovary
10	chr7:96650400-96652200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
11	chr7:96650400-96652200	Bivalent Enhancer	Liver	Liver
12	chr7:96650400-96654200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:96650400-96654400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
14	chr7:96650600-96652000	Bivalent Enhancer	Stomach Mucosa	stomach
15	chr7:96650600-96652400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
16	chr7:96650800-96652000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:96650800-96652200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chr7:96650800-96652200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
19	chr7:96650800-96652200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
20	chr7:96650800-96653600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:96651000-96652200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr7:96651000-96652200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr7:96651000-96652200	Flanking Bivalent TSS/Enh	Placenta	Placenta
24	chr7:96651000-96652200	Bivalent Enhancer	Right Ventricle	heart
25	chr7:96651000-96653200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:96651000-96653400	Bivalent Enhancer	Fetal Muscle Leg	muscle
27	chr7:96651200-96652000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:96651200-96652200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
29	chr7:96651200-96652800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
30	chr7:96651200-96653200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:96651200-96653200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
32	chr7:96651400-96652000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
33	chr7:96651400-96652000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
34	chr7:96651400-96652000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
35	chr7:96651400-96652200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:96651400-96653200	Bivalent/Poised TSS	Fetal Stomach	stomach
37	chr7:96651400-96653400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
38	chr7:96651400-96654000	Bivalent/Poised TSS	Fetal Brain Female	brain
39	chr7:96651400-96654400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:96651600-96652000	Bivalent Enhancer	Brain Substantia Nigra	brain
41	chr7:96651600-96652800	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
42	chr7:96651600-96653000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr7:96651600-96653200	Weak transcription	Right Atrium	heart
44	chr7:96651600-96653400	Weak transcription	Pancreas	Pancrea
45	chr7:96651600-96654400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr7:96651600-96654400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
47	chr7:96651600-96654400	Bivalent/Poised TSS	Fetal Lung	lung
48	chr7:96651800-96652000	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:96651800-96652000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
50	chr7:96651800-96652000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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