Variant report

Variant	rs7813291
Chromosome Location	chr8:131912374-131912375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10956556	0.94[ASN][1000 genomes]
rs10956558	0.89[EUR][1000 genomes]
rs10956559	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10956560	0.91[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.82[LWK][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs10956561	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11777051	1.00[ASN][1000 genomes]
rs11777920	1.00[ASN][1000 genomes]
rs11781997	1.00[ASN][1000 genomes]
rs11784445	1.00[ASN][1000 genomes]
rs12155612	0.89[EUR][1000 genomes]
rs12543858	0.96[ASN][1000 genomes]
rs12547243	0.87[EUR][1000 genomes]
rs13248582	0.99[ASN][1000 genomes]
rs28536655	0.82[ASN][1000 genomes]
rs28692964	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34269716	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34673547	1.00[ASN][1000 genomes]
rs34829883	1.00[ASN][1000 genomes]
rs34950289	0.82[ASN][1000 genomes]
rs35874367	1.00[ASN][1000 genomes]
rs3923135	0.87[EUR][1000 genomes]
rs3923136	0.87[EUR][1000 genomes]
rs3923137	0.87[EUR][1000 genomes]
rs56235569	1.00[ASN][1000 genomes]
rs56251739	0.96[ASN][1000 genomes]
rs6415520	0.93[ASN][1000 genomes]
rs6415521	0.93[ASN][1000 genomes]
rs6415522	0.99[ASN][1000 genomes]
rs6415523	0.99[ASN][1000 genomes]
rs6470859	0.93[ASN][1000 genomes]
rs6470860	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6998875	0.93[ASN][1000 genomes]
rs7001417	0.90[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes]
rs7001427	0.87[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes]
rs7001517	0.90[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes]
rs7011483	0.89[EUR][1000 genomes]
rs7016933	0.90[EUR][1000 genomes]
rs7461282	0.86[EUR][1000 genomes]
rs7463591	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7464362	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7819655	0.93[ASN][1000 genomes]
rs7821012	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7829177	1.00[ASN][1000 genomes]
rs7832185	0.93[ASN][1000 genomes]
rs7843127	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612294	chr8:131645079-131923377	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891448	chr8:131668278-131968469	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1034107	chr8:131740146-131985765	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv539747	chr8:131740146-131985765	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131895800-131914600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:131912200-131915200	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links