Variant report

Variant	rs7814
Chromosome Location	chr11:93496183-93496184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93494902..93497097-chr11:93516511..93518843,2	MCF-7	breast:
2	chr11:93473682..93478163-chr11:93493405..93496207,4	K562	blood:

Variant related genes	Relation type
ENSG00000182919	Chromatin interaction
ENSG00000042429	Chromatin interaction
ENSG00000166012	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1150326	0.81[EUR][1000 genomes]
rs1298531	0.81[CEU][hapmap]
rs2077408	0.93[EUR][1000 genomes]
rs34057693	0.82[EUR][1000 genomes]
rs3763808	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55734929	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs598495	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs606087	0.85[CEU][hapmap]
rs61498836	0.81[EUR][1000 genomes]
rs61904953	0.82[EUR][1000 genomes]
rs61904957	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs654896	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs664257	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs66460850	0.93[EUR][1000 genomes]
rs66483735	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66487029	0.82[EUR][1000 genomes]
rs66760087	0.82[EUR][1000 genomes]
rs66797025	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs669565	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs670391	0.81[EUR][1000 genomes]
rs67594435	0.82[EUR][1000 genomes]
rs676586	0.85[CEU][hapmap]
rs67681709	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs677019	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs67734074	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs679241	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7117456	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72976543	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72976568	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93475200-93497000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:93475600-93497000	Weak transcription	NHDF-Ad	bronchial
3	chr11:93476000-93497000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:93476000-93497200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:93476000-93498800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:93476200-93499800	Weak transcription	NH-A	brain
7	chr11:93478200-93498800	Weak transcription	Fetal Heart	heart
8	chr11:93478600-93498200	Weak transcription	Stomach Mucosa	stomach
9	chr11:93478800-93508200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:93482000-93499600	Weak transcription	NHEK	skin
11	chr11:93482400-93499200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:93482800-93498400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:93483000-93497800	Strong transcription	Liver	Liver
14	chr11:93484800-93498200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:93485000-93498600	Strong transcription	Duodenum Mucosa	Duodenum
16	chr11:93485000-93499800	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:93485200-93497200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr11:93485200-93497600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr11:93485400-93498600	Strong transcription	Fetal Thymus	thymus
20	chr11:93486000-93499000	Strong transcription	Fetal Muscle Leg	muscle
21	chr11:93486200-93497200	Weak transcription	Right Atrium	heart
22	chr11:93486600-93497000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:93486600-93497000	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr11:93486600-93497200	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr11:93486600-93497800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:93486600-93498800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:93486600-93499000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:93486600-93499000	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:93486600-93499000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:93486800-93496200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:93486800-93496600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr11:93486800-93497000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:93486800-93497000	Strong transcription	Adipose Nuclei	Adipose
34	chr11:93486800-93497200	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:93486800-93497200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:93486800-93497600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:93486800-93497800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr11:93486800-93497800	Strong transcription	Placenta	Placenta
39	chr11:93486800-93498000	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:93486800-93498000	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr11:93486800-93498200	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:93486800-93499200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr11:93487000-93498000	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:93487200-93497600	Strong transcription	Primary B cells from cord blood	blood
45	chr11:93488000-93496600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:93488000-93497600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:93488200-93498200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:93488200-93498600	Strong transcription	Thymus	Thymus
49	chr11:93488200-93499200	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr11:93488400-93497000	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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