Variant report

Variant	rs7814292
Chromosome Location	chr8:121564211-121564212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28417261	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4345605	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4486251	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4514024	0.80[CEU][hapmap]
rs58883879	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6469936	0.84[GIH][hapmap]
rs7017132	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7816034	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7823914	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7824846	0.84[GIH][hapmap]
rs7827807	0.81[GIH][hapmap]
rs7845125	0.92[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv519152	chr8:121458457-121571266	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1021757	chr8:121501179-121620441	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv539740	chr8:121501179-121620441	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121527800-121581600	Weak transcription	Spleen	Spleen
2	chr8:121536400-121574600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:121543000-121565200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:121548000-121570200	Strong transcription	Liver	Liver
5	chr8:121551000-121565400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:121551800-121565200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:121552000-121565400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:121553200-121574200	Weak transcription	Psoas Muscle	Psoas
9	chr8:121553200-121574800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:121556200-121586400	Weak transcription	Fetal Intestine Small	intestine
11	chr8:121557800-121597400	Weak transcription	Osteobl	bone
12	chr8:121558000-121569600	Weak transcription	Left Ventricle	heart
13	chr8:121558200-121574400	Weak transcription	NHDF-Ad	bronchial
14	chr8:121560400-121586800	Weak transcription	Fetal Stomach	stomach
15	chr8:121560600-121597000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:121560800-121568800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr8:121561000-121591600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr8:121561200-121569400	Weak transcription	Adipose Nuclei	Adipose
19	chr8:121561200-121574400	Weak transcription	HSMM	muscle
20	chr8:121561200-121582600	Weak transcription	Fetal Intestine Large	intestine
21	chr8:121561200-121585200	Weak transcription	Fetal Kidney	kidney
22	chr8:121561200-121586000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr8:121561200-121586400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:121561200-121586800	Weak transcription	Gastric	stomach
25	chr8:121561200-121586800	Weak transcription	Lung	lung
26	chr8:121561200-121596400	Weak transcription	Pancreas	Pancrea
27	chr8:121561400-121566000	Weak transcription	Primary T cells from cord blood	blood
28	chr8:121561400-121567000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr8:121561400-121567400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:121561400-121568000	Weak transcription	HSMMtube	muscle
31	chr8:121561400-121569000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr8:121561400-121572000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr8:121561400-121581600	Weak transcription	Fetal Muscle Leg	muscle
34	chr8:121561400-121582600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr8:121561400-121583000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr8:121561400-121585400	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr8:121561400-121586000	Weak transcription	NHLF	lung
38	chr8:121561400-121586400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr8:121561800-121565600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr8:121561800-121567000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr8:121561800-121567200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:121561800-121567600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr8:121561800-121568000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr8:121561800-121568200	Weak transcription	Primary B cells from cord blood	blood
45	chr8:121561800-121568800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr8:121561800-121583000	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr8:121561800-121585600	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr8:121562200-121564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr8:121562200-121567000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr8:121562200-121567000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links