Variant report

Variant	rs7816034
Chromosome Location	chr8:121559465-121559466
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10109195	0.81[CEU][hapmap]
rs10113166	0.80[CEU][hapmap]
rs28417261	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4329308	0.81[CEU][hapmap]
rs4345605	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4486251	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514024	0.85[CEU][hapmap]
rs58883879	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60683471	0.83[ASN][1000 genomes]
rs7017132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017780	0.80[CEU][hapmap]
rs7812594	0.80[CEU][hapmap]
rs7814292	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7823914	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7835353	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv519152	chr8:121458457-121571266	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1021757	chr8:121501179-121620441	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539740	chr8:121501179-121620441	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121503200-121563000	Weak transcription	Esophagus	oesophagus
2	chr8:121519800-121562200	Weak transcription	Thymus	Thymus
3	chr8:121527800-121581600	Weak transcription	Spleen	Spleen
4	chr8:121529000-121563600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:121530400-121563000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:121536400-121562800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:121536400-121574600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:121541800-121560200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr8:121541800-121561600	Weak transcription	Colon Smooth Muscle	Colon
10	chr8:121542800-121561000	Weak transcription	Ovary	ovary
11	chr8:121542800-121563800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:121543000-121565200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:121543600-121562800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:121546600-121562200	Strong transcription	Primary hematopoietic stem cells	blood
15	chr8:121546600-121562200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:121548000-121570200	Strong transcription	Liver	Liver
17	chr8:121548200-121563200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:121548400-121561800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:121549000-121560600	Weak transcription	Placenta	Placenta
20	chr8:121549200-121562800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr8:121549400-121561600	Weak transcription	Brain Anterior Caudate	brain
22	chr8:121549400-121563600	Strong transcription	HepG2	liver
23	chr8:121549600-121560200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr8:121549800-121562600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr8:121550400-121560000	Weak transcription	Fetal Lung	lung
26	chr8:121550400-121561800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr8:121550800-121560000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr8:121550800-121561400	Strong transcription	Primary T cells from cord blood	blood
29	chr8:121551000-121565400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr8:121551400-121560000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr8:121551400-121562800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr8:121551800-121565200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr8:121552000-121565400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr8:121553200-121574200	Weak transcription	Psoas Muscle	Psoas
35	chr8:121553200-121574800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:121553600-121559800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr8:121553800-121559800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:121553800-121560000	Weak transcription	Gastric	stomach
39	chr8:121553800-121560800	Weak transcription	Aorta	Aorta
40	chr8:121553800-121562400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr8:121554000-121559800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr8:121554200-121559800	Weak transcription	Adipose Nuclei	Adipose
43	chr8:121554200-121559800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr8:121554400-121559800	Weak transcription	Primary B cells from cord blood	blood
45	chr8:121554400-121559800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr8:121554600-121559800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr8:121555800-121559800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr8:121556000-121560000	Weak transcription	Fetal Intestine Large	intestine
49	chr8:121556200-121559600	Weak transcription	Lung	lung
50	chr8:121556200-121560000	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links