Variant report
| Variant | rs7814776 |
|---|---|
| Chromosome Location | chr8:106948376-106948377 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:106941329..106943808-chr8:106947861..106949687,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000201627 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10092927 | 0.80[ASN][1000 genomes] |
| rs10097411 | 0.85[EUR][1000 genomes] |
| rs10098367 | 0.86[EUR][1000 genomes] |
| rs10108222 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs10955405 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11782609 | 0.80[ASN][1000 genomes] |
| rs12542647 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs12676365 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs13439705 | 0.82[ASN][1000 genomes] |
| rs1353449 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1496180 | 0.81[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs16873925 | 0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs16873932 | 0.93[ASN][1000 genomes] |
| rs16873989 | 0.80[ASN][1000 genomes] |
| rs1813399 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs4734126 | 0.80[ASN][1000 genomes] |
| rs4734892 | 0.81[CHB][hapmap] |
| rs55811614 | 0.80[ASN][1000 genomes] |
| rs57607757 | 0.80[ASN][1000 genomes] |
| rs57715289 | 0.80[ASN][1000 genomes] |
| rs59858392 | 0.80[ASN][1000 genomes] |
| rs62525696 | 0.80[ASN][1000 genomes] |
| rs6997487 | 0.82[ASN][1000 genomes] |
| rs7002447 | 0.85[EUR][1000 genomes] |
| rs7013082 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7836196 | 0.80[ASN][1000 genomes] |
| rs9283942 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1019518 | chr8:106923469-106959075 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv515580 | chr8:106925995-106956427 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv3324625 | chr8:106926825-106951186 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
