Variant report

Variant	rs16873932
Chromosome Location	chr8:106918465-106918466
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10505091	0.85[EUR][1000 genomes]
rs10955405	0.98[ASN][1000 genomes]
rs12542361	0.84[EUR][1000 genomes]
rs12542647	1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12676365	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13274603	0.91[CEU][hapmap]
rs1353449	0.95[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs1496180	0.90[CHB][hapmap]
rs16873925	0.85[ASN][1000 genomes]
rs4734892	0.90[CHB][hapmap]
rs59858392	0.85[EUR][1000 genomes]
rs6469038	0.91[CEU][hapmap]
rs7013082	0.95[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs727419	0.91[CEU][hapmap]
rs7814776	0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7836196	0.84[EUR][1000 genomes]
rs993177	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv891261	chr8:106880649-106932634	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106915200-106920600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:106915200-106930200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:106917600-106918600	Enhancers	Osteobl	bone
4	chr8:106917800-106918800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:106918400-106918600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:106918400-106918600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:106918400-106918600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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