Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107071595..107074143-chr8:107092425..107094759,2	K562	blood:

Variant related genes	Relation type
ENSG00000251003	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10955412	0.96[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs10955413	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11781331	0.88[ASN][1000 genomes]
rs11997513	1.00[ASN][1000 genomes]
rs12541635	0.99[ASN][1000 genomes]
rs12542361	0.81[EUR][1000 genomes]
rs13274603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13277300	0.87[ASN][1000 genomes]
rs1366969	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1835266	0.91[ASN][1000 genomes]
rs1896916	0.91[ASN][1000 genomes]
rs1896917	0.85[ASN][1000 genomes]
rs1896918	0.99[ASN][1000 genomes]
rs1896919	0.99[ASN][1000 genomes]
rs2881036	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2881037	0.99[ASN][1000 genomes]
rs4099936	0.91[ASN][1000 genomes]
rs4734130	0.91[ASN][1000 genomes]
rs4734131	0.91[ASN][1000 genomes]
rs4734896	0.98[ASN][1000 genomes]
rs4734897	0.98[ASN][1000 genomes]
rs6469038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016835	0.90[ASN][1000 genomes]
rs727419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7459459	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7464413	0.98[ASN][1000 genomes]
rs7829054	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv611843	chr8:107088426-107104545	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107090400-107095000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:107090600-107099000	Weak transcription	Esophagus	oesophagus
3	chr8:107091400-107092800	Enhancers	Aorta	Aorta
4	chr8:107091800-107092600	Enhancers	Brain Anterior Caudate	brain
5	chr8:107091800-107092800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:107091800-107093400	Enhancers	Brain Hippocampus Middle	brain
7	chr8:107092000-107092800	Weak transcription	Adipose Nuclei	Adipose
8	chr8:107092000-107092800	Enhancers	HUVEC	blood vessel
9	chr8:107092200-107092800	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr8:107092200-107092800	Enhancers	NHLF	lung
11	chr8:107092400-107093000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:107092400-107093000	Enhancers	Ovary	ovary
13	chr8:107092400-107093600	Enhancers	Stomach Smooth Muscle	stomach
14	chr8:107092400-107094800	Enhancers	NH-A	brain
15	chr8:107092400-107095400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:107092400-107096200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:107092400-107096200	Enhancers	Osteobl	bone
18	chr8:107092600-107092800	Enhancers	Duodenum Mucosa	Duodenum
19	chr8:107092600-107093000	Enhancers	Brain Cingulate Gyrus	brain
20	chr8:107092600-107093000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr8:107092600-107094200	Weak transcription	Brain Anterior Caudate	brain

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